... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• wLake program homepage

Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• ETS_water_bridges
• Hydrophobic clusters
• About authors ot this complex

Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• Program of MCCMB'05

. ћ . Наши юбиляры . љљљљљљљ љљљљљљљљљ . ћ Сотрудники отдела . ћ Наша научная работа . ћ Семинар по Звездной астрономии . ћ Конференции . ћ Общий Каталог Переменных Звезд . ћ Каталог рассеянных скоплений . ћ Московская школа звездной астрономии . ћ Юбилеи сотрудников . ћ Избранные публикации . ћ Педагогическая и популяризаторская деятельность . ћ Наши интернет-ресурсы и другие полезные ресурсы . ћ Ссылки на каталоги и базы данных . ћ Фотогалерея . Присылайте Ваши вопросы и комментарии Ольге Дурлевич

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• Stars proper motions in NGC7063 open cluster
• SAL- Numerical Analysis - Discrete Methods Related Tools - BoxLib
• SAL- Other Scientific Fields - Artificial Intelligence - FCLUSTER

... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Structure
• SAI OCL Catalog Description
• SAI OCL Catalog Virtual Observatory

Beck R., Frick P., Stepanov R., Sokoloff D. Recognizing magnetic structures by present and future radiotelescopes with RM Synthesis, eprint arXiv:1204.5694, 2012. We investigate whether the method of wavelet-based Faraday rotation measure (RM) Synthesis can help us to identify structures of regular and turbulent magnetic fields in extended magnetized objects, such as galaxies and galaxy clusters. ... We present observational tests to recognize magnetic field structures. ...

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• Beck R., Frick P., Stepanov, R., Sokoloff D. Recognizing magnetic structures by
• D.Sokoloff, E.Illarionov, Cluster analysis for solar butterfly diagrams, Межд.
• Cluster analysis for pattern recognition in solar butterfly diagrams, AN, {\bf

... The results will be also sent to you via E-MAIL to address: sherlock1991@rambler.ru . ... BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA ...

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... Dzwinel W., Yuen D.A., Boryczko K. - Cluster Analysis, Data-Mining, Multi-dimensional Visualization of Earthquakes over Space, Time and Feature Space . ... Название: Cluster Analysis, Data-Mining, Multi-dimensional Visualization of Earthquakes over Space, Time and Feature Space . Авторы: Dzwinel W., Yuen D.A., Boryczko K. Аннотация: . ... Seismic events, quantized in space and time, generate the multi-dimensional feature space of the earthquake parameters. ...

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• Seul M., O'Gorman L., Sammon M.J. - Practical algorithms for image analysis.
• Jain A.K., Dubes R.C. - Algorithms for clustering data :: Электронная
• Ikhouane F., Rodellar J. - Systems with Hysteresis: Analysis, Identification

An approach to cluster system task flow monitoring, analysis, and visualization" . Adinetz A.V., Bryzgalov P.A., Voevodin Vad.V., Zhumatiy S.A., Nikitenko D.A. Big cluster systems are spreading wide, so that the efficiency of use of such systems is a very actual task for now. ... This can be achieved by the continuous monitoring of running tasks and by data analysis. ... Keywords: parallel computing, monitoring, tasks flow, computing cluster . PostScript (in Russian) (437KB) . ...

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• "Numerical simulation of shock wave amplification in a bubble cluster on a
• "Microarray data analysis with a fuzzy clustering algorithm"
• "A lattice Monte Carlo model for nanostructure formation analysis"

... There are two methods of describing plant associations of the lake-shore: visual and analytical. ... We analyzed each lake separately with help of cluster analysis (Manchattan distance, Ward method). ... Besides, cluster analysis only for common plant species was performed. ... All common species on this lake form one multitudinous cluster (fig. 5), except for Comarum palustre and Equisetum fluviatile (the same group of species reveled by cluster analysis for common species from other lakes). ...

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... Chemistry of Coordination Compounds . ... Inorganic Synthesis . ... CLUSTERS AND EXTENDED METAL-METAL BOND SYSTEMS IN INORGANIC COMPOUNDS . ... Cluster compounds, structure & bonding, quantum chemistry . ... Inorganic synthesis, bismuth clusters, metal subhalides . ... inorganic synthesis, clusters, mixed chalcogenides . ... Design, synthesis and investigations of inorganic compounds featuring extended systems of homo- and heterometallic bonds of varying (1D, 2D) dimensionality. ... Kuznetsov . ...

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• Inorganic Synthesis Laboratory - Supramolecular and Cluster Compounds
• Synthesis, Crystal and Electronic Structure of Subvalent Metal Compounds

... This guide discusses the concept and use of Dynamic HTML, which includes style sheets, content positioning, and downloadable fonts. ... This document discusses each of the three components of Dynamic HTML, describes how to use them, and gives examples of the use of each one. ... Positioning HTML Content contains the following chapters: Chapter 7, "Introduction," introduces the concept of positioning HTML content and discusses the two kinds of syntax you can use to create positioned blocks of content...

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• Heliophysics, Internal structure and seismology
• Springer LINK:A&A-EE: Table of Contents Volume 320 Number 3 (1997)
• Springer LINK:A&A-EE: Table of Contents Volume 329 Number 1 (1998)

Please enter the lightcurve file name and period search parameters: . Lightcurve file: . ... Apply the Heliocentric correction and convert all dates to Terrestrial Time (TT)? ... Also, the Heliocentric correction cannot be applied to such lightcurves. ... This period search service is also available at the mirror sites: Mirror 1 , Mirror 2 , Mirror 3 , Mirror 4 . You may download the latest source code distribution and install the period search service at your own web server. ...

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Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Technological Institute for Superhard and Novel Carbon Materials . ... Therefore, in solving the problems will be applied as specialized methods for the study of polyatomic structures - the method of empirical potentials Brenner . ... AREA: Condensed Matter Physics, Theoretical Physics, Physical Chemistry . ... Moscow State Uiversity . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Inorganic Chemistry | Moscow University Supercomputing Center
• APPLICATIONS: Mathematics | Moscow University Supercomputing Center
• APPLICATIONS: Geophysics | Moscow University Supercomputing Center

COMPARISON OF CLUSTERING ALGORITHMS FOR SPEAKER IDENTIFICATION Nikolay Lubimov, Evgeny Mikheev, Alexey Lukin Moscow Lomonosov State University, Moscow, Russia In this paper we consider the problem of text-independent speaker identification that refers to acoustic recognition research. ... We have performed the comparison of different clustering methods for speaker identification: the standard K-means clustering, K-means++, Linde-Buzo-Gray, Fuzzy C-means, and Gustafson-Kessel algorithms. ...

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• Research | Laboratory of Mathematical Methods of Image Processing
• Hermite projection methods for human iris identification | Laboratory of

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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