... Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. Weight of column = l / sum(l) (l = number of sequnces representing column) . ... 9 # Create alignment from sequences . ... 15 # For each sequence, print number of gaps and non-gaps in alignment . ... 19 for column in alignment . ... 26 # Print number of gaps in each column . ... 29 column_gaps = 0 . ... 31 if sequence not in column : . ...

Еще в разделе: (Показать все результаты (>35152) - kodomo.fbb.msu.ru/ )

• allpy: 6a50c2042d0e test/usecase1.py
• allpy: a3df15a42f9d test/usecase1.py
• allpy: a89409bb4653 test/usecase1.py

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

Еще в разделе: (Показать все результаты (>3565) - monkey.belozersky.msu.ru/ )

• Inquiry information || Rule of four sequences
• About this project
• About authors ot this complex

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

Еще в разделе: (Показать все результаты (>6990) - mouse.belozersky.msu.ru/ )

• PLANdbAffy: probe-level annotation database for Affymetrix expression
• SVETKA, a program for multiple sequence alignments analysis

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

Еще в разделе: (Показать все результаты (>35) - mouse.genebee.msu.ru/ )

• Nhunt: program for nucleic acid sequence similarity search

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

Еще в разделе: (Показать все результаты (>145) - bioinf.fbb.msu.ru/ )

• SDPlight
• RNA Alignment
• SDPpred

... During the three days of conference, 30 oral and 11 poster papers were presented about: i) Paleosol-sedimentary sequences (loess, alluvial, lacustrine, volcanic, etc.) as a record of the Pleistocene and Holocene environmental change; ii) Magnetic properties of Quaternary and pre-Quaternary paleosols and sediments as paleoclimatic indicators; iii) Paleopedology and archaeology and dating of paleosols. Paleopedological evidences of ancient man-induced environmental change. Applied Paleopedology. ...

Еще в разделе: (Показать все результаты (>198) - www.fadr.msu.ru/ )

• INQUA - SEQS

... Laboratory-Division Quantum Electrodynamics of Self-Organizing Systems and Dynamical Properties of Time . ... The Problems of Quantum Electrodynamics . ... The Hamiltonian theory of interacting electromagnetic and. electron-positron fields is proposed, both in unbounded absorptive dispersive media and in media separated from the vacuum by plane boundary. ... Radiative and Nonradiative Quantum Transitions of Electron in the Field of Plane Electromagnetic Wave and Constant Homogeneous Magnetic Field ....

Еще в разделе: (Показать все результаты (>457) - chronos.msu.ru/ )

• Laboratory-chair of Discrete mechanics on a microscopic scale

... Submitted Sequences: . ... Results 1.REFINED ALIGNMENT Power 4.27 Homology percent 5.3 Symbols used in the alighnment charts: ' ' - average weight of column pair exchanges is less than weight matrix mean value '.' - is less than mean value plus one SD '+' - is less than mean value plus two SD '*' - is greater than mean value plus two SD .. ... SQ1 ( 48) yhtcggillnSHWVLTAAHCFKNKkkvt SQ2 ( 46) srqtfsirsiSQNGYDPRQNLNDVL--- SQ3 ( 1) ----------SRRTYTLTDYLKSTFr-- 5TH LOCAL SUPERMOTIF, power 2.51 + *.. ...

Еще в разделе: (Показать все результаты (>246) - www.genebee.msu.ru/ )

• AliGraf - GeneBee Graphical Alignment Help
• RNA secondary structure prediction
• AliComp - GeneBee Alignment Comparison Help

... This study examined the role of plasma lipids in the regulation of erythrocyte membrane viscosity, oxy-Hb content as well as Na+/H+ exchange and Ca2+-ATPase, whose activities are altered in patients with CVD. Both oxy-Hb content and erythrocyte membrane fluidity were decreased in essential hypertension and coronary artery disease patients and negatively correlated with plasma cholesterol but not triglyceride content. ... 2007 Biophysics dep., ...

Еще в разделе: (Показать все результаты (>91) - www.msm.biophys.msu.ru/ )

• Approved Presentations

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>339) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/156.pdf
• MCCMB'15
• OMICS Startup Contest

Scoring Matrices . Matrix Sequences Sequence Consisting of the first four Amino Acids in the Protein GYRB_ECOL: . ... Sequence Achieved by Substitution of the 2nd and 4th Amino Acid and Insertion between the 3d and 4th Amino Acid, in the Protein GYRB_ECOLI, to randomly chosen new amino acids: . ... Matrix Sequences Sequence Consisting of the First Nine Amino Acids of the Protein GYRB_ECOLI: . ... Sequence Consisting of 2nd, 3d, 7th, 8th and 9th Amino Acid Residues of the Protein GYRB_ECOLI: . ...

Еще в разделе: (Показать все результаты (>3858) - kodomo.cmm.msu.ru/ )

• Множественное выравнивание.

... K. Krylov . There was undertaken a research of lengthes of marinon - some integral units obtained by segmenting of comleted (whole) fiction prosaic texts (stories, small novels, novels). ... Overall corpus of considereded texts (Russian fiction prosaic) contain more than two million of graphic running words. Undertaken research has lead us to revealing of three main regularities. 1) to formulation of the law of optimum relation between number of elements within each submicroscopic level; . ...

Еще в разделе: (Показать все результаты (>66) - old.philol.msu.ru/ )

Tools for working with parametrized graphic representations in the ADEPT tool kit" . Arushanian O.B., Bogomolov N.A., Kovalev A.D. Tools for working with parametrized graphic representations used in the ADEPT tool kit are considered. ... The formulation of the problem, the peculiarities of realization, and the use of parametrized graphic representations in the framework of the ADEPT tool kit are discussed. PostScript (in Russian) (107KB) . PDF (in Russian) (94.4KB) . ...

Еще в разделе: (Показать все результаты (>472) - num-meth.srcc.msu.ru/ )

• "The representation of a wavelet transform of the Gaussian family by a
• Iterative methods for solving inverse problems of ultrasonic tomography
• "Organization of quantum chemical computations using the Firefly package in a

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>12609) - lib.mexmat.ru/ )

• Поиск книг, содержащих Unary representation :: Электронная библиотека
• Sakai S. - C*-algebras and W*-algebras :: Электронная библиотека
• Thomas C. - Characteristic Classes and the Cohomology of Finite Groups ::

previous next contents elements attributes . Contents . ... This document has been written with two types of readers in mind: HTML authors and HTML implementors. ... This is reflected in the specification's main table of contents, which presents topical information, and the indexes, which present lower level information in alphabetical order. ... Every reference to an element or attribute is linked to its definition in the specification. ... Sections 2-3: Introduction to HTML 4.0 . ...

Еще в разделе: (Показать все результаты (>205) - itpm.msu.su/ )

• Introduction to HTML 4.0
• Be Paranoid-- Call Sequence Checks

... It produces blocks of 585 bits. ... Records: Each 585 bit block is placed in a record of 8-bit bytes. format is a length byte, a command byte and the data bytes. is an integral number of bytes. ... length | command| data | ... The line below represents a DATA bit, C represents a command bit, S represents a sequence bit, represents 68 other data octets, record, where L represents a length M represents the synchronization mark, F represents a fill bit, the dash and an D represents a data bit. ...

Еще в разделе: (Показать все результаты (>16575) - mirror.msu.net/ )

• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc769.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc2254.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc2254.txt

. Русский . Home News Program Committee Organizing Committee Program Plenaries Special Sessions Registration Abstracts Accommodation Important dates Contacts Poster Links Conference Venue Video . Video Records of Presentations . 2007 2008 Optimal Control Department, . CMC Faculty of Lomonosov MSU .

Еще в разделе: (Показать все результаты (>45) - pont2008.cmc.msu.ru/ )

• Registration International Conference Differential Equations and Topology
• Program International Conference Differential Equations and Topology dedicated

. Home . Research and papers . Contacts . Home . Research and papers . Contacts .

Еще в разделе: (Показать все результаты (>231) - polly.phys.msu.ru/ )

• International Workshop "Theory and Computer Simulation of Polymers: New
• Seminar in Polymer Physics

General Information . ... Program . ... Symposium expenses . ... Presentation information . ... Cultural Program . Travel information . Contact information . 14 European Symposium on . Gas Phase Electron Diffraction . ... A0 (84 cm width 120 cm height) . ... A1 (59 cm width 84 cm height) . ...

Еще в разделе: (Показать все результаты (>15) - ged.chem.msu.ru/ )

• Organizing Committee. 14 European Symposium on Gas Phase Electron Diffraction
• Symposium expenses. 14 European Symposium on Gas Phase Electron Diffraction
• General Information. 14 European Symposium on Gas Phase Electron Diffraction

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

Еще в разделе: (Показать все результаты (>1418) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE
• SAL- Other Scientific Fields - Chemistry, Biology Related - SeqPup