... 4 from monomer import AminoAcidType . ... 21 * name -- str with the name of sequence . ... 44 def __init__ ( self , monomers = None , name = '' , description = "" ): . ... 102 def from_str ( fasta_str , name = '' , description = '' , monomer_kind = AminoAcidType ): . ... 191 def pdb_has ( self , chain , monomer ): . ... 194 def secstr_has ( self , chain , monomer ): . ... 198 def file_slice ( file , n_from , n_to , fasta_name = '' , name = '' , description = '' , monomer_kind = AminoAcidType ): . ...

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• allpy: 137057949976 lib/sequence.py
• allpy: 3048f18154ef lib/sequence.py
• allpy: deae8240d396 allpy/sequence.py

. text Ref: http:// For information, go to http:// . Santesson Elly, 2004

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• http://kodomo.cmm.msu.ru/~ellys/ligand.html
• Term 1

Number of cores used . ... Standard MCQDPT2 benchmark using resolvent fitting , Wall clock time and relative speedup . ... Intel Quad-core Core i7 940 2.93 GHz, Asus P6T-Deluxe Mainboard, 6x2GB (triple channel) DDR3-1333 RAM@1333 MHz, Seagate 1 TB SATA-2 ST31000340NS HDD, Windows Server 2008 Enterprise x64. ... Single-point semi-direct two-state MCQDPT2 energy (using resolvent fitting code) for medium-size system (retinal molecule, cc-pVDZ, 565 Cartesian basis functions, CAS(12,12)). ...

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• PC GAMESS vs. WinGamess performance comparison
• PC GAMESS v. 7.0 benchmarks on different Intel Pentium 4 family (Netburst)
• PC GAMESS v. 7.1 MP2 gradient code benchmarks on Woodcrest-based Windows system

... 20.09.2009 . 3-d International Laser Graduate School "Modern Problems of Laser Physics LGS-2009 " . ... Opt., 2009, v. 11, 074008 . ... Transient CARS spectroscopy of rotational transitions in H2: the statistical dependences of the Doppler and collision dephasing // V.G.Arakcheev , A.A.Valeev , V.B.Morozov , A.N.Olenin , V.G.Tunkin , D.V.Yakovlev, Transient CARS spectroscopy of rotational transitions in H2: the statistical dependences of the Doppler and collision dephasing, Quantum Electron., ...

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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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... DevHlp_Security This devhlp allows to open a file for read access in the Init routine of a BASEDEV . ... returned: size of file SYIOpenFile ends Valid at INIT time only. ... This routine uses the corresponding function of the miniFSD , not normal file I/O, thus access is restricted. ... Although the size argument of the data structure implies, I'd recommend to better not read more than 32K at a time. ... DL = 044h This function will return the table of security helper functions for file access. ...

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• Heliophysics, Internal structure and seismology
• Index of /ftproot/pub/comp/hardware/NCR/samp_code

... 3.0.8 - 3.0.18 only, PHP 4 >= 4.0.0) xml_parse_into_struct -- Parse XML data into an array structure . ... php class AminoAcid { var $ name ; // aa name var $ symbol ; // three letter symbol var $ code ; // one letter code var $ type ; // hydrophobic, charged or neutral function AminoAcid ($aa) { foreach ($aa as $k= $v) $this- $k = $aa[$k]; } } function readDatabase($filename) { // read the xml database of aminoacids $data = implode( ,file($filename)); $parser = xml _parser_create(...

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• mysql_errno
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Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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... DNA chains . RNA chains . Protein chains . ... TRANSFERASE/DNA . ... dna . ... ANTIBIOTIC/DNA . ... TRANSCRIPTION/DNA . ... 1997-12-10 . ... VIRAL PROTEIN/RNA . ... rna . ... ISOMERASE/DNA . ... VIRUS/RNA . ... TRANSCRIPTION/RNA . ... VIRAL PROTEIN/DNA . ... HYDROLASE/DNA . ... RNA BINDING PROTEIN/RNA . ... DNA BINDING PROTEIN/DNA . ... TRANSFERASE/RNA . ... GENE REGULATION/DNA . ... GENE REGULATION/RNA . ... HYDROLASE/RNA . ... PROTEIN/DNA . ...

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• Hydrophobic clusters
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Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... Used for: <-- --> . ... HTML templates, used by TWiki scripts . ... The pub directory stores data-related files, including images used by TWiki and FileAttachments . ... twikilogo.gif . ... The TWiki distribution includes four start-up webs - Main , TWiki , Know , Test - with documentation and demo content, and a _default directory containing all topics required to start a new web. ... Error message . ...

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ntptrace [ -vdn ] [ -r retries ] [ -t timeout ] [ server ] . ntptrace determines where a given Network Time Protocol (NTP) server gets its time from, and follows the chain of NTP servers back to their master time source. ... Note that the stratum is the server hop count to the primary source, while the synchronization distance is the estimated error relative to the primary source. ... Prints verbose information about the NTP servers. ...

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• SAL- Parallel Computing - Tools Utilities - DEEP
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• SAL- Computer Graphics, Images Signals - Image Viewers, Conversions

... Back T., Fogel D.B., Michalewicz Z. - Evolutionary computation (Vol. ... Advanced algorithms and operators) . ... Название: Evolutionary computation (Vol. ... Авторы: Back T., Fogel D.B., Michalewicz Z. Аннотация: . ... I feel that "How to solve it" by Michalewicz and Fogel and "Genetic algorithms + data structures = evolution programs" by Michalewicz both provide this experience useful to implement evolutionary techniques, by not trying to trade-off pages for understandability. ...

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• Seul M., O'Gorman L., Sammon M.J. - Practical algorithms for image analysis.
• Digital Video Broadcasting (DVB); Framing structure, channel coding and

... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... The documentation in Russian. ... These systems contain millions lines of code, thousands - tens of thousands classes. Visualization could help programmer to better comprehend these large systems, to orientate between lot of objects of these systems, to analyze intricate structure of code and find required information. ... Doc3D: Система трехмерной визуализации архитектуры программных систем . ...

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• DOC3d: A 3d Documentations system for programming languages | Лаборатория

... Class . ... Provides an abstraction for multidimensional array access, some concrete implementations, and ways to view a MultiArray as if it had a different structure. ... This interface defines the services required by MultiArrayProxy to manipulate indexes and the dimensions of a MultiArray. ... In the following, we use the unadorned term "array" to mean the Java language construct, and the term "multidimensional array" for the mathematical abstraction modeled by the MultiArray class in this...

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TreeDL: a language for description of graph structures and operations on them" . Demakov A.V. Some methods of graph representation and processing in object-oriented languages are considered. Desirable features and a tool support of a language for description of graph structures and operations on them are analyzed. The TreeDL language having these features is described and compared with other approaches. PostScript (in Russian) (244KB) . ... Demakov A.V. e-mail: demakov@ispras.ru ...

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• "On the quaternary coding of cubic structures"
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• "Bijective coding in the constructive world of R n c "

. а б?аКаОаВаОаДб?б?аВаО аПаОаЛб?аЗаОаВаАб?аЕаЛб? Gnumeric . Prev . Next . CODE -- . CODE(char) . т?Еб?аВб?а?аПа?аПб?а? ASCII-аЗб?б? б?б?а? а?б?б?б?б?б?аП @char. аМа?аП а?а?б?аЗа?б?а? а?б?б?б?б?а?а?б?б?аП а? Excel. CODE("A") а?аПб?б?а?б?а?а?а? 65. CHAR . Prev . Home . Next . CLEAN . Up . COLUMN

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• mod_so - Apache HTTP Server
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... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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• Index of /npidb/pdb
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• Index of /npidb/pdb/samples/dna

Protein 3D architectures and structural motifs: automated annotation E.A. Aksianov1, A.V. Alexeevski 1 2 1,2 Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia evaksianov@gmail.com, aba@belozersky.msu.ru Description of a protein 3D structure in terms of structural domains, architecture, topology and structural motifs is a hard problem. ... The core is extended by small -sheet (unit_3). ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/134.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/202.pdf

The first major global tomographic study was made by Professor Dziewonski in early 70's. The idea of this study was that the travel time anomalies observed for many ray paths, criss-crossing the Earth between various points near the Earth's surface and reaching different depths in its interior, could be resolved formally into a three-dimensional (3-D) model. ... How to use Harvard's 3-D Earth models? Now, you can download source codes in order to use Harvard's recent Earth models. ...

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... 13-Aug-2014 12:13 106K lk_20140815_0905.tar.. 15-Aug-2014 09:06 106K lk_20140901_0823.tar.. 01-Sep-2014 08:23 103K lk_20141016_1324.tar.. 16-Oct-2014 13:25 103K lk_20141211_1708.tar.. 11-Dec-2014 17:08 103K lk_20150430_0315.tar.. 30-Apr-2015 03:15 103K lk_20150430_0420.tar.. 30-Apr-2015 04:20 103K lk_20150818_1511.tar.. 18-Aug-2015 15:11 104K lk_20151113_1903.tar.. 13-Nov-2015 19:04 105K lk_20160314_0610.tar.. 14-Mar-2016 06:11 105K . ...

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