... To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. ... 9 container is iterable collection of items. 10 item is object getting markup data (new attribute). 11 . ... 32 def __init__ ( self , name , container , map_out = {}): . ... 65 def __contains__ ( self , item ): . ... 88 def from_string ( cls , string , name , container , map_out = {}): . ... 94 self = cls ( name , container , map_out ) . ... 103 def items ( self ): ...

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• allpy: d87129162eb4 allpy/markup.py
• allpy: allpy/base.py diff
• allpy: 679665ecae37 allpy/block.py

... Contains identifying information and characteristics of the sequence . Идентификатор последовательности, часто кодирует биологически осмысленную информацию, меняется от выпуска к выпуску БД . ... The name of the protein, often a function indicator . ... Taxonomy cross-reference(s) . ... The sequential number of the literature citation within the entry . ... The type of data, and the position in the sequence to which the citation refers . ... Reference comment(s) . ... Sequence data . ...

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• SwissProt fields
• Банк нуклеотидных последовательностей EMBL

. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• ETS numeration assumed
• HTH3_numeration_assumed
• SDPpred

... List of solitary restriction endonucleases in complete prokaryotic genomes . List of groups of orthologous R-M systems. List of all analyzed genomes. Contains those orthologous groups that include at least one separated R-M system . R-M orthologous group ID . REs alignments . MTases alignment . Group 1 . ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression
• PDB entries containing domains of the family "RNA dependent RNA polymerase"
• PDB entries containing domains of the family "Ribbon-helix-helix protein, copG

Sequin . Sequin is a program designed to aid in the submission of sequences to the GenBank, EMBL, and DDBJ sequence databases. ... http://www.ncbi.nlm.nih.gov/Sequin/ . ... Other Packages: Yes, ftp://ncbi.nlm.nih.gov/sequin/ . ... None . ... ftp://ncbi.nlm.nih.gov/sequin/ . ... User Comments: . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . Comments? SAL@KachinaTech.COM . Copyright 1995-2001 by Herng-Jeng Jou . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - MOLPHY
• SAL- Computer Graphics, Images Signals - Misc - siggen
• SAL- Numerical Analysis - Misc - Radix-2 Fast Fourier Transform

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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• MINLOC and MAXLOC | PARALLEL.RU - Информационно-аналитический центр по

Context analysis of SNP containing sites in mammalian genomes Nataly S. Safronova Novosibirsk State University, Novosibirsk, Russia, taschasafronova@mail.ru Irina Abnizova Welcome Trust Sanger ... Cytology and Genetics, Novosibirsk, Russia {bob,brukaro,orlov}@bionet.nsc.ru Due to technological breakthrough in the next-generation sequencing (NGS) technologies volume of available genomic ... Association of SNP position in human genome with mononucleotide repeats was shown earlier. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/19.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf

... 3.0.4 - 3.0.18 only, PHP 4 >= 4.0.0) imap_fetch_overview -- Read an overview of the information in the headers of the given message . array imap_fetch_overview ( int imap_stream, string sequence [, int flags]) . ... mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $overview = imap_fetch_overview($mbox,"2,4:6",0); if(is_array($overview)) { reset($overview); while( list($key,$val) = each($overview)) { print $val->msgno . ... val->subject . ...

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• imap_mail_move
• range
• LDAP functions

S .. ... SNP regions in the dataset are 21bp fragments of the genome containing SNP in the middle position . ... Word frequencies in SNP regions of the human genome (zip file, 66 MB) . ... Word frequencies in SNP regions of the human genome (xls file, 1.2 MB) . The file contains the frequency of each word of length 1, 2, 3, 4 or 5 in flanks of SNP regions for several criteria of SNP selection. These frequencies are compared to the frequencies of the same words in the complete human genome . ...

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• Nhunt: program for nucleic acid sequence similarity search

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPsite - PF07978
• SDPsite - PF01171

HELLU101.WAD - Hell in the University (version 1.01) A single-player level for Doom or Ultimate Doom v1.9 with some new graphics, music, sound, and monster death sequences. ... You can still play HELLU101 with 'Plain Vanilla' Doom or Ultimate Doom, but you'll need to add the extra sprite graphics to hellu101.wad using a program such as DeuSf, DeuTex, WinTex, NWT, etc. ... WAD --- All the Level "Hell in the University" was created by Lorenzo, this is the really last version of many many previous ones! ...

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• http://crydee.sai.msu.ru/ftproot/pub/rec/music/XG/songs/michael_walthius/GS/demons.txt
• Главная последовательность. The Main Sequence

... The numbers of three types of compact binaries containing accreting NSs and BHs, which are most interesting from the point of view of their observational appearances, have been calculated as a function of time: i) X-ray transient source containing a NS in an eccentric orbit around a main sequence Be-star (the observed prototype: A0535+26), ii) BH The evolution of the selected types of X-ray binaries during the first 10 million years after the starburst onset is presented in Fig. ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Be Paranoid-- Call Sequence Checks
• send, wait and sleep
• The /etc directory

... Keywords Query and List of the fileds in the bank's records. Query Sequence. List of Banks to do screenining. Screening consists of two stages: . First stage: Screening by keyword . Only those sequences from the specified banks are selected which in the specified fields contain given keywords. Second stage: Screening by Similarity . The screening is made exactly only for those sequences, which were selected on the first stage. ...

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• AliComp - GeneBee Alignment Comparison Help
• Fasta3 help
• Databases

Construction of sequences of zeros and ones with complex finite sequences / A. Yu. ... Vestnik Moskovskogo Universiteta. Seriya 1. ... We construct infinite sequences of zeros and ones under some restrictions (not to contain subwords of some definite type or definite bits at definite positions, etc.) This paper concerns probabilistic methods of constructing such sequences with application of Lov sz lemma and their reformulation in terms of the Kolmogorov complexity and Martin-L f randomness. ...

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• Vestnik Moskovskogo Universiteta. Seriya 1. Matematika. Mekhanika Вестник

... Atkinson D., Johnson P.W. - Exercises in Quantum Field Theory: A Self-Contained Book of Questions and Answers . ... Название: Exercises in Quantum Field Theory: A Self-Contained Book of Questions and Answers . Авторы: Atkinson D., Johnson P.W. Аннотация: . ... It contains the full solutions of all 100 exercises and problems of Volume 2, Quantum Field Theory: A Self-Contained Course. For the convenience of the user, each question is reproduced in this book, followed immediately by the solution. ...

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• Niederreiter H. - Random number generation and quasi-Monte Carlo methods ::
• Поиск книг, содержащих CONTAINS :: Электронная библиотека попечительского
• Поиск книг, содержащих Марковская последовательность (Markov sequence) ::

Other Formats: . ... Full text paper in PDF format . ... This modified 5S RNA could be reconstituted efficiently into 50S ribosomal subunits or 70S functional complexes. ... A crosslink in high yield was reproducibly observed between the modified 5S RNA and 23S RNA, involving residue U-89 of the 5S RNA (at the loop end of helix IV) linked to nucleotide 2477 of the 23S RNA in the loop end of helix 89, immediately adjacent to the peptidyltransferase "ring." ...

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... Next: Microscope Parameters Data Up: Operations with files Previous: Slide Show Contents Index . Curves, when opened, are represented in a way same with sections (see for details). So, the possibilities to work with and to represent the curves are the same with these possibilities for sections. ... In this situation one curve will be active and represented with solid line. ... Next: Microscope Parameters Data Up: Operations with files Previous: Slide Show Contents Index Filonov 2005-02-04 ...

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• Microscope Parameters Data

The QKeyEvent class contains parameters that describe a key event. ... QKeyEvent  ( int type, int key, int ascii, int state )  . ... void  accept  ()  . ... Key events occur when a key is pressed or released when a widget has keyboard input focus. A key event contains a special accept flag which tells whether the receiver wants the key. ... Constructs a key event object. ... Sets the accept flag of the key event object. ... Clears the accept flag parameter of the key event object. ...

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• Qt Toolkit - QImageIO Class
• How Directory, Location and Files sections work
• Apache module mod_auth_dbm

... METHOD . ... public interface AttributeSet . AttributeSet is an inquiry interface for a collection of Attributes. ... Tests if the Attribute identified by name is in this set. ... Retrieve the attribute associated with the specified name. ... Returns AttributeIterator for the elements. ... a new Array containing the elements of this set. public Attribute get (java.lang.String name) . ... If a different Attribute with the same name, was in the set, it is returned, otherwise null is returned. ...

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• : Interface DimensionSet
• : Class Schema
• : Class AbstractNetcdf