S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Molecular biology databases
• S publications

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK.sequences_chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first Sequence .pdb_files added to store information about pdb file for each ... monomers = monomers...

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• allpy: lib/sequence.py diff
• allpy: 675b402094be lib/block.py
• allpy: lib/block.py diff

. Презентация . Источник . , "ООО Шиндяпина 2008"

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• статьи о карбоксилэстеразе bioH
• Escherichia coli AspC
• Функции белка UbiC

Enclosure structures of equal level line fields in the gradient filling problem" . Ivanov B.N. In this paper, the method of gradient filling of equal level line fields by color scale is considered. ... The root tree structure of equal level line enclosure is applied to the context analysis of all equal level line values in order to correctly specify the color values of their filling. A working algorithm of gradient filling of equal level lines is given. PostScript (in Russian) (2.67MB) . ...

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Электронная библиотека Попечительского совета . ... Burdick Ch.L., Ellis J.H. - The Crystal Structure of Chalcopyrite Determined by X Rays . ... Название: The Crystal Structure of Chalcopyrite Determined by X Rays . Авторы: Burdick Ch.L., Ellis J.H. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Heggins D., Taylor W. - Bioinformatics: Sequence, Structure and Databanks ::
• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Clark G.L. - The Significance of the Experimentally Determined Crystal

... Results . ... The main results of 2004 were the comparative analysis of genetic diversity of populations of saiga (Saiga tatarica). ... Molecular-genetic diversity and phylogeographic structure of moose population (Alces alces) in the different regions of European part of Russia and Ural were also studied. ... This testifies enough lengthy migrations of moose within the studied region and genetic unity of moose of Europe and Ural. ... Low genetic diversity of this species was determined. ...

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• Laboratories: Laboratory for Microevolution and Domestication of Mammals: Goals

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite
• SDPsite - PF01398
• SDPsite - PF00582

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Databases
• Screening protein sequence against PROSITE databank
• Notes on searching by similarity

... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

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... 1991 Molecular structure and conformations of bicyclohexyl, (С6Н11)2, as studied by electron diffraction, vibrational spectroscopy and molecular mechanics . Dorofeeva O.V. , Mastryukov V.S., Almeninngen A. , Horn A., Klaeboe P. , Yang L., Allinger N.L. в журнале Journal of Molecular Structure , издательство Elsevier BV (Netherlands) , том 263, с. 281-297 DOI . ... 1981 Электронографическое исследование строения молекулы 1,12?дииоддикарба-клозо-додекаборана (12) 1,12-C2I2B10H10 в газовой фазе . ...

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• Golubinskii A.B. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Rudakov F.M. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Samdal S. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

Probing -directed structured elements detection in RNA sequences S.V. Vinogradova Moscow State University, Faculty of Bioengineering and Bioinformatics , 119991, Moscow , GSP-1, Leninskiye Gory, MSU, 1-73 kintany@gmail.com R.A. Soldatov Moscow State University, Faculty of Bioengineering and Bioinformatics , 119991, Moscow , GSP-1, Leninskiye Gory, MSU, 1-73 solrust@mail.ru M.A. Mironov ... 2013) Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/126.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/202.pdf

... The analysis of dielectric properties of the unsaturated monohydric alcohols (cis- and trans-3-methyl-2-pentene-5-in-1-ols and 3-methyl-1-pentene-4-in-3-ol) and their their mixtures with tetrachloromethane at all mixture composition and temperature intreval 253-313 K war performed. ... An unified description of molecular nature of dielectric properties of a mixture in terms of generalized quasichemical models on the molecular-structural level was demonstrated. ...

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• Moscow University Chemistry Bulletin Vol. 43, No. 5, P. 259 (2002)
• Moscow University Chemistry Bulletin Vol. 48, No. 3, P. 207 (2007)
• Molecular Structure and Conformations of Bicyclopentyl, C5H9-C5H9, as Studied

... The LanHEP input file is the sequence of statements, each starts with a special identifier (such as parameter, lterm etc) and ends with the full-stop ' . ... This section is aimed to clarify the syntax of LanHEP input files, i.e. the structure of the statements. ... Let us consider the LanHEP input files for the Standard Model with both the t'Hooft-Feynman and unitary gauges. ... LanHEP allows the user to define several keys , and use these keys to branch among several variants of the model. ...

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• General structure
• MRS structure functions

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• S : rm_systems
• wLake program homepage
• Example of alignment

... Molecular structure and dynamics of the dimeric human small heat shock protein HSPB6. ... ATP-independent small heat-shock proteins (sHSPs) are an essential component of the cellular chaperoning machinery. ... We addressed the three-dimensional structure and functional properties of HSPB6 in a hybrid study employing X-ray crystallography, solution small-angle X-ray scattering (SAXS), mutagenesis, size-exclusion chromatography and chaperoning assays. ...

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• The role of intrinsically disordered regions in the structure and functioning
• Structure, properties, and probable physiological role of small heat shock
• Structure, properties, and functions of the human small heat-shock protein

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt: program for nucleic acid sequence similarity search

MOLMOL . ... http://www.mol.biol.ethz.ch/wuthrich/software/molmol/ . ... Software/Hardware Requirements: . ... ftp://ftp.mol.biol.ethz.ch/pub/software/MOLMOL . ftp://ftp.bruker.de/pub/bruker/MOLMOL . Mailing Lists/USENET News Groups: . Mailing List Subscription to molmol-l-request@mol.biol.ethz.ch . Mailing List archive at http://www.mol.biol.ethz.ch/wuthrich/software/molmol/archive/ . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE
• SAL- Other Scientific Fields - Chemistry, Biology Related - Protein Structure
• SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz

... 5DPK structure . Page of complex: 5DPK . Home Browse Download Help About Us . ... PDB ID . ... MUTY ADENINE GLYCOSYLASE BOUND TO A TRANSITION STATE ANALOG (1N) PAIRED WITH D(8-OXOG) IN DUPLEXED DNA TO 2.2 A . ... View in . ... Protein chains: . DNA chains: . ... 5dpk.pdb1.pdb . ... Pfam domains . ... Download file with secondary structure created by Stride . 5dpk.pdb1.pdb: [ download sequences in FASTA format ] . ... Click "SHOW" for view sequence . ... NPIDB team 2003 - 2016 . ...

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• NPIDB: Home