... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entry from each column of the position-dependent scoring matrix that represents the motif. ... Sequence Name ...

Еще в разделе: (Показать все результаты (>6951) - kodomo.cmm.msu.ru/ )

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

Еще в разделе: (Показать все результаты (>1504) - monkey.belozersky.msu.ru/ )

• Molecular biology databases
• SVETKA, a program for multiple sequence alignments analysus
• Inquiry information || Parsimony algorithm

... In addition to normal ODBC support, the Unified ODBC functions in PHP allow you to access several databases that have borrowed the semantics of the ODBC API to implement their own API. ... odbc_fetch_into -- Fetch one result row into array . ... odbc_gettypeinfo -- Returns a result identifier containing information about data types supported by the data source. odbc_primarykeys -- Returns a result identifier that can be used to fetch the column names that comprise the primary key for a table . ...

Еще в разделе: (Показать все результаты (>1226) - oit.cmc.msu.ru/ )

• yaz_database
• fbsql_db_status
• Database (dbm-style) abstraction layer functions

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

Еще в разделе: (Показать все результаты (>145) - bioinf.fbb.msu.ru/ )

• SDPlight
• Input Formats
• SDPpred

... BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. ... The BLAST 2.0 search engine has been designed for optimal speed and sensitivity. ... Gapped BLAST and PSI-BLAST are useful search tools provided by the BLAST server (version 2.0) (Altschul et al., ... You can download blastcl3 form the anonymous FTP location ftp://ncbi.nlm.nih.gov/blast/network/netblast/ . ...

Еще в разделе: (Показать все результаты (>220) - www.genebee.msu.ru/ )

• RNA secondary structure prediction
• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help

237deca179632c4284df36ab098b76dc64b116fa # Parent 88631907f23daf178438cf9313ab1af0ed6f449d Converted docstrings and init of base. Block to match our plan diff -r 88631907f23d -r 237deca17963 allpy /base.py --- a/ allpy /base.py Thu Dec 16 19:24:22 2010 +0300 +++ b/ allpy /base.py Thu Dec 16 20:42:42 2010 +0300 @@ -336,43 +336,43 @@ pass - ## Unclean code follows +class Block (object): + Block of alignment . -class ... If sequences are not given, the block uses all sequences in alignment. ...

Еще в разделе: (Показать все результаты (>39133) - kodomo.fbb.msu.ru/ )

• Help: log
• allpy: 177f7ee1d3a1 test/usecase2.py
• allpy: 237deca17963

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

Еще в разделе: (Показать все результаты (>6992) - mouse.belozersky.msu.ru/ )

• Geometrical core
• SVETKA, a program for multiple sequence alignments analysis
• NPG-explorer

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

Еще в разделе: (Показать все результаты (>551) - www.parallel.ru/ )

• Heterogeneous networks of multicomputers and the ch_nexus device | PARALLEL.RU
• Semantic Terms | PARALLEL.RU - Информационно-аналитический центр по
• Data Access Routines | PARALLEL.RU - Информационно-аналитический центр по

... DVARP(database,field,criteria) . ... The populations consists of numbers that match conditions specified. @database is a range of cells in which rows of related information are records and columns of data are fields. The first row of a database contains labels for each column. @field specifies which column is used in the function. ... For example, ``Age'' refers to the column with the label ``Age'' in @database range. @criteria is the range of cells which contains the specified conditions. ...

Еще в разделе: (Показать все результаты (>513) - uneex.lorien.cs.msu.su/ )

• DSTDEVP
• DSTDEV
• DPRODUCT

Contents] [Prev page] [Next page] [Index] . Navigator 4 from Netscape, which is part of the Communicator product suite, includes three new areas of functionality that taken together give you Dynamic HTML. The three components of Dynamic HTML are style sheets, content positioning, and downloadable fonts. Used together, these three components give you greater control over the appearance, layout, and behavior of your web pages. ... Introducing Downloadable Fonts . ...

Еще в разделе: (Показать все результаты (>3378) - crydee.sai.msu.ru/ )

• Specifications
• Colors and backgrounds
• Long description for example illustrating positioning with respect to a

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>314) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/222.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/4.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

The sort command is a simple database tool. It allows you to specify the field to be sorted on and the type of sort to be carried out on it. sort filename . Lines are sorted into the following order: lines starting with numbers come first, followed by lines starting with upper-case letters, which are followed by lines starting with lower-case letters and finally symbols such as % and ! ... Saving the results of a sort to a file . Checking if a file has been sorted . ...

Еще в разделе: (Показать все результаты (>284) - comet.sai.msu.ru/ )

• Horizontal Tabs
• Understanding HTML and MIME
• Figures

Network Working Group P. Hoffman Request for Comments: 4156 VPN Consortium Category: Historic August 2005 The wais URI Scheme Status of This Memo This memo defines a Historic Document for the Internet community. ... Abstract This document specifies the wais Uniform Resource Identifier (URI) scheme that was originally specified in RFC 1738. ... Scheme Definition The WAIS URL scheme is used to designate WAIS databases, searches, or individual documents available from a WAIS database. ...

Еще в разделе: (Показать все результаты (>20694) - mirror.msu.net/ )

• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc4156.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc86.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc86.txt.pdf

Next: Writing the Master Files Up: Running named Previous: The named.boot File . Master files included by named, like named.hosts, always have a domain associated with them, which is called the origin . ... All data contained in a master file is split up in resource records , or RRs for short. ... Each resource record has a type. ... Resource record representations in master files share a common format, which is [domain] [ttl] [class] type rdata Fields are separated by spaces or tabs. ...

Еще в разделе: (Показать все результаты (>481) - itpm.msu.su/ )

• MySQL Reference Manual for version 3.23.10-alpha. - 19 Solving some common
• Changes between HTML 3.2 and HTML 4.0
• Translations of the HTML 4.0 Specification

HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

Еще в разделе: (Показать все результаты (>3057) - www.sai.msu.su/ )

• Further Information and Bibliography
• SAL: Database Systems
• SAL- Database Systems - Relational DBMS - Oracle Products

You can search database for submitted information. ... Character * specifies arbitrary character sequence (eg. '*n' will result: John, Martin etc.) Character * is placed at end of line automatically ('Mar*' = 'Mar' will result: Martin, Martina etc.) Blank form will result ALL database records. ... Family name: . ... Topic: . ... Seismo-tectonics of Tsunami 3. Numerical and Analytical Models of Local Tsunami Behavior 4. ... Recent Local Tsunamis 8. ... Information . ... Database search . ...

Еще в разделе: (Показать все результаты (>32) - seac47-2.phys.msu.ru/ )

... Data . ... Models . Solar energetic particles . ... Neutron flux variations (RU) . ... This software computes omnidirectional, integral, or differential (in energy) fluxes of electrons and protons trapped in Earth's radiation belts for specified energy, L-value, and B/B0 range. The fluxes are obtained by an interpolation procedure from the experimental data. ... MODEL - one of following integer numbers, flux model: . ... AE4MAX, electrons, solar maximum . AE4MIN, electrons, solar minimum . ...

Еще в разделе: (Показать все результаты (>69) - smdc.sinp.msu.ru/ )

... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

Еще в разделе: (Показать все результаты (>33) - mouse.genebee.msu.ru/ )

• ConClus
• Nhunt

... Field size . Object name . ... Map size . ... Field size: the approximate size of the map in the Y direction. ... Galaxies: . ... Galaxies, which size exceeds some value depending on the field and map sizes, are displayed with their real positional angles and sizes by 25m isophote. ... In the "tools" fields there are links to the several famous AVO (Astrophysical Virtual Observatory) resources: NED and Simbad databases and DSS2 (Palomar Digitized Sky Survey) images of the corresponding sky area. ...

Еще в разделе: (Показать все результаты (>7732) - www.astronet.ru/ )

• Journal "Peremennye Zvezdy"
• Tutulemma: Solar Eclipse Analemma
• La Palma Eclipse Sequence

Электронная библиотека Попечительского совета . ... Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . ... Название: Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . Автор: Brown S.M. Аннотация: . A practical overview of bioinformatics, for researchers. ... Also discusses and evaluated programs for PCs, the Internet, and mainframes. DLC: Bioinformatics. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>10370) - lib.mexmat.ru/ )

• Dubinko M. - XForms Essentials :: Электронная библиотека попечительского совета
• Attwood T.K., Parry-Smith D.J. - Introduction to bioinformatics :: Электронная
• Claverie J.-M., Notredame C. - Bioinformatics For Dummies :: Электронная