README for standalone MEGABLAST (last updated 7/2/2004) Mega BLAST uses the greedy algorithm of Zhang et al. [1] for nucleotide sequence alignment search and concatenates many queries to save time spent scanning the database. ... All regions of the query sequences, that were hit by any found alignment, are masked by N's. The output is written to a file specified by the -Q option. ... Like in blastall binary, this option allows to treat lower case in the query sequences as masked residues. ...

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... Peptide Sequence Databases . ... BLAST searches can be limited to the results of an Entrez query against the database chosen. ... For example: Mus musculus[Organism] For help in constructing Entrez queries please see the " Writing Advanced Search Statements " section of the Entrez Help document. ... Only following combinations of the Matrix, Open & Extended Gaps are available: Recomended combinations are colored. ... Gap . ... Standard BLAST alignment in pairs of query sequence and database match. ...

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• GeneBee BLAST 2.2.22+ Services Help
• BLAST Basic Overview
• BLAST Frequently Asked Questions (FAQ)

... Protein sequences . ... European ribosomal RNA database . ... Thermodynamic database for protein-nucleic acids interactions (Japan) . ... Families of structurally similar proteins . ... Database of protein families and HMMs (collection of multiple sequence alignments and hidden Markov models) . ... Collection of protein families constructed by clustering complete protein sequences. ... Database issues of NAR: vol. 31 (2003) , vol. 32 (2004) , vol. 33 (2005) , vol. 34 (2006) , vol. 35 (2007) , vol. ...

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• SVETKA, a program for multiple sequence alignments analysus
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PHP Manual . Prev . Next . PHP 4 >= 4.0.6) yaz_database -- Specifies the databases within a session . int yaz_database ( int id, string databases) . This function specifies one or more databases to be used in search, retrieval, etc. - overriding databases specified in call to yaz_connect() . Multiple databases are separated by a plus sign + . This function allows you to use different sets of databases within a session. ...

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... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Modules . ... mod_ext_filter presents a simple and familiar programming model for filters . ... any programming/scripting language can be used, provided that it allows the program to read from standard input and write to standard output . existing programs can be used unmodified as Apache filters . ... mod_ext_filter directive to define a filter . ... program /usr/bin/enscript, with the type of . ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Modules . ... mod_ext_filter presents a simple and familiar programming model for filters . ... any programming/scripting language can be used, provided that it allows the program to read from standard input and write to standard output . existing programs can be used unmodified as Apache filters . ... mod_ext_filter directive to define a filter . ... program /usr/bin/enscript, with the type of . ...

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• The DNS Database Files

You can search database for submitted information. ... Character * specifies arbitrary character sequence (eg. '*n' will result: John, Martin etc.) Character * is placed at end of line automatically ('Mar*' = 'Mar' will result: Martin, Martina etc.) Blank form will result ALL database records. ... Family name: . ... Topic: . ... Seismo-tectonics of Tsunami 3. Numerical and Analytical Models of Local Tsunami Behavior 4. ... Recent Local Tsunamis 8. ... Information . ... Database search . ...

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Home . ... Activities . ... Laboratory of Mathematical Methods of Image Processing . Chair of Mathematical Physics . ... Image enhancement . ... Rank image filtering . Image analysis . ... Ringing effect . ... Database . ... Medical imaging . ... Multiresolution analysis and processing . ... The final version of the developed ringing database is available here: . ... The ringing extension of TID 2013 database: . ...

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• Research | Laboratory of Mathematical Methods of Image Processing
• Computer Tomography image filtering | Laboratory of Mathematical Methods of
• Ringing effect modeling | Laboratory of Mathematical Methods of Image...

... USER MAILING LIST . ... TAGGING FOR SPAM MAILS . ... spamassassin - extensible email filter used to identify spam . ... Mail :: SpamAssassin Spam detector and markup engine Mail :: SpamAssassin ::ArchiveIterator find and process messages one at a time Mail :: SpamAssassin ::AutoWhitelist auto-whitelist handler for SpamAssassin Mail :: SpamAssassin ::Bayes determine spammishness using a Bayesian classifier Mail :: SpamAssassin ::BayesStore Bayesian Storage Module Mail :: ...

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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• Nhunt

Network Working Group Request for Comments: 5292 Category: Standards Track E. Chen S. Sangli Cisco Systems August 2008 Address-Prefix-Based Outbound Route Filter for BGP-4 Status of This Memo This document specifies an Internet standards track protocol for the Internet community, and requests discussion and suggestions for improvements. ... Conceptually, an Address Prefix ORF entry consists of the fields <Sequence, Match, Length, Prefix, Minlen, Maxlen>. ... NLRI.length == ORF.length | ...

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Homepage: http://api.jqueryui.com/autocomplete/ . ... Autocomplete, when added to an input field, enables users to quickly find and select from a pre-populated list of values as they type, leveraging searching and filtering. ... A data source can be: . an Array with local data . ... The local data can be a simple Array of Strings, or it contains Objects for each item in the array, with either a label or value property or both. ... This topic: System > JQueryPlugin > JQueryUIAutocomplete . ...

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• VarTABLE < System < Foswiki

... line source . ... 2 import data.codes . 3 from data.genetic_code import standard_dna_code . ... 14 by_name = {} . ... 17 class Sequence ( base . ... 20 def reverse_complemented ( self ): . ... 23 Name of the sequence is name of self with apostrophe added. 24 """ . ... 28 description = self . ... 35 def translated ( self , code = None , name = None , description = None , source = None ): . ... 38 `code` is a dict of triplet of dna `code1`s -> aminoacid `name`. ... 57 code = standard_dna_code . ...

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H-PCTE . H-PCTE is a partial, fast implementation of the object management system which is specified in the international standard ECMA -149 /158 (and ISO IS 13719-1 /-2 ). ... H-PCTE has been implemented as a main-memory database system. In order to avoid communication delays between the database server and a client process, segments of the object base can be loaded directly and exclusively into the address space of an application process. ... None . ... SAL Home | ... Object-Oriented DBMS . ...

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... public class ExtensionFileFilter . ... A convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about. ... Extension - create a new filter that filerts out all files but gif and jpg image files: JFileChooser chooser = new JFileChooser(); ExtensionFileFilter filter = new ExtensionFileFilter( new String{"gif", "jpg"}, "JPEG GIF Images") chooser.addChoosableFileFilter(filter); chooser.showOpenDialog(this); . ... private java.lang.String . ...

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... All Morphological filters are based on two operations -- dilation and erosion . ... It is common to call in the above expressions as an image, and as a structural element. The surface plays the role of the image in the morphological filters used in FemtoScan program (lets define it as ), while the object (shown below) most often plays the role of structural element. ... Filter . ... The filter fulfill the operation erosion over the current image using a selected tip as a structural element. ...

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Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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Электронная библиотека Попечительского совета . ... Beaulieu A. - Learning SQL . ... Название: Learning SQL . ... If you're working with a relational database - whether you're writing applications, performing administrative tasks, or generating reports - you need to know how to interact with your data. ... Learning SQL moves you quickly through the basics and then on to some of the more commonly used advanced features. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... CYLINDRICAL PROJECTIONS: -Jc lon0 / lat0 / scale (Cassini) -Jj lon0 / scale (Miller) -Jm scale ( Mercator - Greenwich and Equator as origin) -Jm lon0 / lat0 / scale ( Mercator - Give meridian and standard parallel) -Joa lon0 / lat0 / azimuth / scale (Oblique Mercator - point and azimuth) -Job lon0 / lat0 / lon1 / lat1 / scale (Oblique Mercator - two points) -Joc lon0 / Je lon0 / lat0 / scale (Equidistant). Jf lon0 / lat0 / horizon / scale (Gnomonic). ...

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