IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/rpsblast.html

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• SDPpred
• Molecular biology databases
• ETS numeration assumed

... Heterogeneous networks of multicomputers and the ch_nexus device . ... The startup files for the ch_nexus device are somewhat different, but easy to understand. ... If you have built MPI with ch_nexus device support on multiple platforms, you may not necessarily have the same startup_dir and startup_exe attribute values. ... The startup_count attribute indicates the number of nodes to be used on the SP-2 (in addition to any nodes you may be using on other workstations or multicomputers). ... Центры ...

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• Derived datatypes | PARALLEL.RU - Информационно-аналитический центр по
• Writing wrapper definitions | PARALLEL.RU - Информационно-аналитический центр
• Starting Multiple Executables and Establishing Communication | PARALLEL.RU -

... Protein sequences: . ... OWL : non-redundant database assembled from a number of primary sources including translations of nucleic acid sequences (Swissprot, PIR, NRL3-D and GenPept). ... Database of protein families and HMMs (collection of multiple sequence alignments and hidden Markov models) . ... Collection of protein families constructed by clustering all complete protein sequences in SwissProt. ... The Genome Sequence Database: complete relational database of DNA sequences and annotation . ...

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• Fasta3 help
• BLAST Basic Overview
• BLAST 2.0 Release Notes

Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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• DCOUNT
• DCOUNTA
• DVARP

Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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• The paths database
• The DNS Database Files
• MySQL Reference Manual for version 3.23.10-alpha. - H Description of MySQL

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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Title: MythTV 0.22 Upgrade Database Corruption Author: Richard Freeman <rich0@gentoo.org> Content-Type: text/plain Posted: 2010-03-01 Revision: 1 News-Item-Format: 1.0 Display-If-Installed: <media-tv/mythtv-0.22 Due to an incompatibility between MythTV 0.21 and the default Gentoo MySQL configuration, it is likely that long-time MythTV users will have databases with a mixture of locale encodings. ... The guide below contains instructions that can be used to determine if this problem pertains to you. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/fyi-index.txt
• http://mirror.msu.net/pub/gentoo-portage/www-apps/mediawiki/files/postinstall-1.18-en.txt
• http://mirror.msu.net/pub/gentoo-portage/www-apps/postfixadmin/files/postinstall-en-2.2.0.txt

... A database is a collection of data or information. Database management system (DBMS) is a program that manages data in a database. A database could be as simple as a phone book or stock tables, or as sophisticated as a biological repository with terabytes of data. Relational DBMSs are those that follow the relational data model described by E. D. Codd. ... Search SAL: . Database Systems . ... Linux Databases . ... http://www.iam.unibe.ch/~scg/Archive/Software/FreeDB/ . ... SAL Home | ...

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• Full Text Search in databases
• Sternberg Astronomical Institute
• SAL- Other Scientific Fields - Physics Astronomy - HERMES

... In addition to normal ODBC support, the Unified ODBC functions in PHP allow you to access several databases that have borrowed the semantics of the ODBC API to implement their own API. ... odbc_fetch_into -- Fetch one result row into array . ... odbc_gettypeinfo -- Returns a result identifier containing information about data types supported by the data source. odbc_primarykeys -- Returns a result identifier that can be used to fetch the column names that comprise the primary key for a table . ...