IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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... Heterogeneous networks of multicomputers and the ch_nexus device . ... The startup files for the ch_nexus device are somewhat different, but easy to understand. ... If you have built MPI with ch_nexus device support on multiple platforms, you may not necessarily have the same startup_dir and startup_exe attribute values. ... The startup_count attribute indicates the number of nodes to be used on the SP-2 (in addition to any nodes you may be using on other workstations or multicomputers). ... Центры ...

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... Protein sequences: . ... OWL : non-redundant database assembled from a number of primary sources including translations of nucleic acid sequences (Swissprot, PIR, NRL3-D and GenPept). ... Database of protein families and HMMs (collection of multiple sequence alignments and hidden Markov models) . ... Collection of protein families constructed by clustering all complete protein sequences in SwissProt. ... The Genome Sequence Database: complete relational database of DNA sequences and annotation . ...

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Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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• The paths database
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Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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Title: MythTV 0.22 Upgrade Database Corruption Author: Richard Freeman <rich0@gentoo.org> Content-Type: text/plain Posted: 2010-03-01 Revision: 1 News-Item-Format: 1.0 Display-If-Installed: <media-tv/mythtv-0.22 Due to an incompatibility between MythTV 0.21 and the default Gentoo MySQL configuration, it is likely that long-time MythTV users will have databases with a mixture of locale encodings. ... The guide below contains instructions that can be used to determine if this problem pertains to you. ...

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... A database is a collection of data or information. Database management system (DBMS) is a program that manages data in a database. A database could be as simple as a phone book or stock tables, or as sophisticated as a biological repository with terabytes of data. Relational DBMSs are those that follow the relational data model described by E. D. Codd. ... Search SAL: . Database Systems . ... Linux Databases . ... http://www.iam.unibe.ch/~scg/Archive/Software/FreeDB/ . ... SAL Home | ...

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... In addition to normal ODBC support, the Unified ODBC functions in PHP allow you to access several databases that have borrowed the semantics of the ODBC API to implement their own API. ... odbc_fetch_into -- Fetch one result row into array . ... odbc_gettypeinfo -- Returns a result identifier containing information about data types supported by the data source. odbc_primarykeys -- Returns a result identifier that can be used to fetch the column names that comprise the primary key for a table . ...

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The database of triplet periodicity change points Y.M. Suvorova, E.V. Korotkov Centre of Bioengineering Russian Academy of Sciences, 117312, prospect 60 -tya Oktyabrya 7/1, Moscow, Russia, suvorovay@gmail.com It is well-known that triplet periodicit y (TP) is the dist inguishing feature of protein coding sequences of the majorit y of the living organisms [1]. ... The current version o f the database includes 179 238 records of protein coding sequences with triplet periodicit y change points. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/39.pdf

... The RADEN data bank produced at the Department of Chemistry of Moscow State University is designed as well to accumulate published information on radiative parameters of diatomic molecules, as to analyse it and recommend the more reliable values. ... electronic transition moments D ( R ); . ... dipole moments, . ... FACTUAL RECOMMENDED DATABASE contains now the ab initio and experimental electronic transition moments for more than 250 band systems which belong to more than 100 diatomic molecules. ...

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Correlation Engine Portotype V.Pose, JINR Dubna B.Panzer-Steindel, CERN IT Overview The Correlation Engine Prototype was developed during a 3-month work in CERN IT Division financed by the CERN-Intas project. The CERN monitoring prototype, part of the fabric management work package (WP4) of the DataGrid project, gathers monitoring data from farm nodes in CERN into a central monitoring database. ... Two engines are implemented - ayt and procpu. ... connects to such a node using the ayt engine . ...

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Databases (NSDC) of the Natural Planetary Satellites. ... In the file of explanations, source of data or bibliographic reference is indicated. ... File of data (Data) *.txt. ... Les donnИes standard de la base NSDB (Standard Data) . ... Any bibliographic reference has the following fields (please, don't mix up these reference fields hereafter called "fields" with the search fields where you will enter the data and which are hereafter denoted as "search fields" or "text fields"): . ...

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This module provides for user authentication using DBM files. ... Source File: mod_auth_dbm.c . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... AuthDBMGroupFile . ... Module: mod_auth_dbm . ... The AuthDBMUserFile directive sets the name of a DBM file containing the list of users and passwords for user authentication. ... This program can be used to create and update DBM format password files for use with this module. ...

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This module is contained in the mod_auth_dbm.c file, and is not compiled in by default. ... The AuthDBMGroupFile directive sets the name of a DBM file containing the list of user groups for user authentication. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... The AuthDBMUserFile directive sets the name of a DBM file containing the list of users and passwords for user authentication. ...

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... Previously, fileio received the alignment torn-apart into sequence representations as strings with gaps, sequence names and descriptions. ... 9 container is iterable collection of items. 10 item is object getting markup data (new attribute). 11 . ... 22 * container . ... 32 def __init__ ( self , name , container , map_out = {}): . ... 65 def __contains__ ( self , item ): . ... 88 def from_string ( cls , string , name , container , map_out = {}): . ... 94 self = cls ( name , container , map_out ) . ...

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Bird Species Database (BSD) is being compiled in a framework of the Arctic Birds Breeding Conditions Survey (ABBCS) of the International Wader Study Group (IWSG). BSD aims at providing information on distribution, numbers and breeding status of birds in the Arctic, with the focus on last-breaking and, thus usually unpublished information. The primary source of data is questionnaires filled in by contributors to the ABBCS, while data from literature are being added occasionally. ... breeding . ...

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... Each web can optionally contain a topic called WebNotify. ... Changed: . ... A * will match zero or more other characters - so, for example, Fred* will match all topic names starting with Fred , *Fred will match all topic names ending with Fred , and * will match all topic names. ... Unsubscribing to specific topics - Each topic may optionally be preceded by a '+' or '-' sign. ... Subscribing to entire topic ("news mode") - Each topic may optionally be immediately followed by an exclamation mark ! ...

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