... Markup We sometimes (very often) want to add marks on an alignment. ... Our definitions Examples What works Projects using allpy Future Converting alignment format alignment = protein. Alignment ().append_file( input_file, format= genbank ) alignment .to_file(output_file, format= fasta ) Converting alignment format -- the uncensored version from allpy import protein input_file = open( input_file.fasta ) output_file = open( output_file.fasta , w ) alignment = protein ...

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... About lab . ... The LidarK library provides an open-source framework for processing multidimensional point data such as 3D LIDAR scans. ... Download LidarK 2.0 , or browse for the previous versions and data samples . ... We called the data structure we designed Seg-Tree . ... GML LidarK Library v. 2.0 September 10, 2010 Download . GML LidarK Library v. 1.2 December 5, 2008 Download . GML LidarK Library v. 1.1 September 9,2008 Download . GML LidarK Library v. 1.0 July 1, 2008 Download . ...

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Materials Algorithms Project Library . The Materials Algorithms Project serves as a centre for the "validation" and distribution of algorithms of use in the modelling of materials, in the context of materials science and metallurgy. The MAP Library consists of a perpetual FORTRAN library of complete programs and elementary subroutines and functions that enable the user to develop new concepts using existing methods as a foundation. ... SAL Home | Other Scientific Fields | Misc . ...

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... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

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... MPI library implementation . Up: Examples Next: Systems with weak symbols Previous: Profiler implementation . ... Up: MPI library implementation Next: Systems without weak symbols Previous: MPI library implementation . If the compiler and linker support weak external symbols (e.g. Solaris 2.x, other system V.4 machines), then only a single library is required through the use of #pragma weak thus . ... Up: MPI library implementation Next: Complications Previous: Systems with weak symbols . ...

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... Form Templates replace TWikiCategory Tables from the 01-Dec-2000 version of TWiki. Changed: . ... On upgrading from the previous TWiki, a Form Template topic has to be built for each web that used a Category Table, recreating the fields and values from the old twikicatitems.tmpl . ... Name . ... A Form Template topic defines the form. ... If the WebTopicEditTemplate topic has a form added, the form will appear with values set; press Change to remove the template or to switch to a different one. ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• About this project

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK.sequences_chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first Sequence .pdb_files added to store information about pdb file for each ... monomers = monomers...

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As of 1.3, the Apache source directories have been re-organised. This re-organisation is designed to simplify the directory structure, make it easier to add additional modules, and to give module authors a way of specifying compile time options or distribute binary modules. ... The non-module source files have moved from src into src/main . ... Configure . ... For example, say it is called mod_demo.c. The archive for this module should consist of two files, in a suitable directory name. ...

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... Eubanks B. - Wicked Cool Java: Code Bits, Open Source Libraries, and Project Ideas . ... Название: Wicked Cool Java: Code Bits, Open Source Libraries, and Project Ideas . ... Wicked Cool Java contains 101 fun, interesting, and useful ways to get more out of Java. ... Full of example code and ideas for combining them in useful projects, this book is perfect for hobbyists, and professionals will find tips and open-source projects to enhance their code and make their jobs easier. ...

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... Like ordinary make, metamake keeps platform-dependent files (object, executables, libraries) for repeated usage. To use the metamake, one must define basic project directories (task directory, target root, object directory etc) and prepare two simple files: task-file that contains common project settings (selected compilers, common system libraries etc) and architecture- independent Imake-file which includes project description along with compiler and linker directives. ...

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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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As of 1.3, the Apache source directories have been re-organised. This re-organisation is designed to simplify the directory structure, make it easier to add additional modules, and to give module authors a way of specifying compile time options or distribute binary modules. ... The non-module source files have moved from src into src/main . ... Configure . ... For example, say it is called mod_demo.c. The archive for this module should consist of two files, in a suitable directory name. ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Align tool for DNA-protein complexes

... Запись в библиотеку . ... Книги . ... История МГУ: библиография . ... В каталоге отражены отечественные газеты с 2013 года по настоящее время, хранящиеся в отделах Научной библиотеки. ... Картотека включает описания материалов (с 2005 г.) по истории МГУ имени М.В. Ломоносова. ... Научная библиотека МГУ имени М.В. Ломоносова (НБ МГУ) - обособленное подразделение в структуре университета, действует на основании Положения о библиотеке . ... 2016 Научная библиотека МГУ имени М.В. Ломоносова (НБ МГУ)ї . ...

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