... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• About this project
• Inquiry information || Parsimony algorithm

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Align tool for DNA-protein complexes

... Сайт МГУ . ... Дистанционные олимпиады Факультета иностранных языков и регионоведения Интервью заместителя декана по информационно-образовательным технологиям Назаренко Аллы Леонидовны. фото дня Фоторепортаж с "Дня первокурсника" . ... Центр дистанционного образования МГУ имени М.В.Ломоносова предлагает школьным учителям обучение по следующим программам повышения квалификации: . ... Добавлена информация о дистанционной программе MBA Экономического факультета МГУ . ... и непрерывного образования МГУ,...

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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• SDPsite - Algorithm Format requirements

... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: fb3164f03984 lib/block.py
• allpy: 117b03ee9e8f allpy/block.py
• allpy: 6dfc736f37a9 lib/block.py

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf

... Submitted Sequences: . ... Results 1.REFINED ALIGNMENT Power 4.27 Homology percent 5.3 Symbols used in the alighnment charts: ' ' - average weight of column pair exchanges is less than weight matrix mean value '.' - is less than mean value plus one SD '+' - is less than mean value plus two SD '*' - is greater than mean value plus two SD .. ... SQ1 ( 48) yhtcggillnSHWVLTAAHCFKNKkkvt SQ2 ( 46) srqtfsirsiSQNGYDPRQNLNDVL--- SQ3 ( 1) ----------SRRTYTLTDYLKSTFr-- 5TH LOCAL SUPERMOTIF, power 2.51 + *.. ...

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• Screening of pattern or alignment against PROTEIN databank
• AliGraf - GeneBee Graphical Alignment Help
• IGLA-3D User Guide

... The results will be also sent to you via E-MAIL to address: sherlock1991@rambler.ru . ... BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA ...

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• Help 9(MSA)/term2/2007
• Построение филогенетического дерева бактерий
• Multiple alignment

... Открыт новый набор абитуриентов на дистанционные курсы, а также всех желающих на дистанционный курс английского языка "Bensons" . ... Открыта регистрация на очно-дистанционный курс повышения квалификации . ... Новый дистанционный курс повышения квалификации преподавателей "Integrating Technology into the EFL Classroom" Новая программа профессиональной переподготовки для учителей иностранного (английского) языка "Теоретико-прагматические основы преподавания иностранных языков: современные подходы " ....

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An Annular Solar Eclipse at High Resolution . ... Because of the relatively large distance to the Moon during this Earth-Moon-Sun alignment, the Moon did not have a large enough angular size to block the entire Sun . Those who witnessed the solar eclipse from a narrow path through Spain and Africa , however, were lucky enough to see the coveted Ring of Fire , a dark Moon completely surrounded by the brilliant light of the distant Sun. ... NASA Web Site Statements, Warnings, and Disclaimers . ...

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• Астронет > Asteroids in the Distance
• Asteroids in the Distance

13. SAL- Other Scientific Fields - Chemistry, Biology Related - Swiss PDBViewer

14. Pevzner P.A. - Computational Molecular Biology An Algorithmic Approach ::

15. http://storage.bioinf.fbb.msu.ru/~mazin/laci.fasta

16. Distance Measurement

17. Keep Your Distance - Фильмы - Kinfo.ru

18. "ALIGNMENT IN FREE DECAYING MHD TURBULENCE"

19. Image: Imperial Palace park. At the distance you can see the mountain with a

20. distance (все сообщения)