... Changed the way related types are stored for Alignment, Block, Sequence, Monomer Now each of them has attribute 'type', which is an object with four attributes: - Alignment - Block - Sequence - Monomer . ... allpy/base.py allpy/dna.py allpy/protein.py allpy/rna.py . ... allpy/base.py . ... allpy/dna.py . ... allpy/protein.py . ... allpy/rna.py . ... 1.59 - # Actually given value at EOF, since name Block is not yet defined 1.60 - 1.61 - sequence_type = Sequence 1.62 - """Type of sequences in...

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AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

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... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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A program for automatic detection of aligned blocks in multiple protein alignment. Paste your alignment in fasta-format here: . ... The program works slow - it takes 8 seconds to process alignment of 6 sequences of length 500. The program's development is supported by Russian Foundation for Basic Research (grant 10-07-00685-a) and Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Inquiry information || Formats of alignments
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NPG-explorer : a new tool for nucleotide pangenome construction and closely related prokaryotic genomes analysis Boris Nagaev2, Maxim Nikolaev2, Andrei Alexeevski 1 1,2,3* A.N.Belozersky Institute Of Physico-Chemical Biology and 2Faculty ... @gmail.com Moscow State University, Moscow 119991, Russia 3Scientific Research Institute of System Analysis (NIISI RAS), Moscow Genomes of closely related bacteria have highly similar sequences of orthologous ... Blocks are classified into four categories. ...

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... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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. As your body grows bigger . Your mind grows flowered . It's great to learn . >Cause knowledge is power!< . It's Schoolhouse Rocky . That chip off the block . Of your favourite schoolhouse . Schoolhouse Rock! . Back to main Schoolhouse Rock menu...

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... Using Disks and Other Storage Media . ... The terminology is a bit confusing here: in MS-DOS, the word formatting is used to cover also the process of creating a filesystem (which will be discussed below). ... During formatting one might encounter bad spots on the disk, called bad blocks or bad sectors . ... Total capacity 1440 kB. ... Formatting ... done Verifying ... read: Unknown error $ The badblocks command can be used to search any disk or partition for bad blocks (including a floppy). ...

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Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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... Астронет | ... планета Астронет | ... Сверхновые . Яркая сверхновая в M82 . ... 1999 2000 2001 2002 . ... NASA Web Site Statements, Warnings, and Disclaimers . NASA Official: Jay Norris. ... Публикации с ключевыми словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . Публикации со словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . ... NGC 6188 и NGC 6164 . ... NGC 1999: к югу от Ориона . ...

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... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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... Ctrl + Arrow keys . If the selected cell is occupied then move the selection to the start or end of the occupied block in the current row or column. If the selected cell is not occupied then move the selection to the start or end of the block of unoccupied cells in the current row or column. ... Display the value of the selected cell(s) in Money format. ... Display the value of the selected cell(s) in Percentage format. ... Display the value of the selected cell(s) in Scientific format. ...

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Rattus . Contribution to the species composition and taxonomic status of some Rattus inhabiting Southern Vietnam and Sundaland . ... The sequencing of Cyt b and COI mtDNA genes was used to investigate the species composition of Rattus rats in Southern Vietnam and establish an actual correspondence between revealed mtDNA haplogroups and taxonomical species for the group in the region. ... Definition of Indochinese Rattus losea and a new species from Vietnam // American Museum Novitates. ...

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• Actual problems of modern theriology

blockmode - filter to block average (x,y,z) data by mode estimation. blockmode [ xyz [ w ] file ( s ) ] -I x _ inc [ m|c ][/ y _ inc [ m|c ]] -R west / east / south / north [ r ] [ -H [ nrec ] ] [ -N ] [ -Q ] [ -V ] [ -W [ io ] ] [ -: ] [ -bi [ s ][ n ] ] [ -bo [ s ] ] blockmode reads arbitrarily located (x,y,z) triples [or optionally weighted quadruples (x,y,z,w)] from standard input [or xyz [ w ] file ( s )] and writes to standard ... If used, GMT default is 1 header record. ...

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... The Connection Block is a 3-word block: Word-0: 16-bit Local Port. ... Plummer & Postel [page 9] June 1980 TCP JSYS Calling Sequences CHANL (JSYS 746) 1/ Flags,,JCN or Pointer-to-Connection-Block 2/ Six 6-bit bytes (channel numbers) CHANL R+1: failure, error code in AC 1 R+2: OK. ... Plummer & Postel [page 11] June 1980 TCP JSYS Calling Sequences SCSLV (JSYS 744) 1/ Flags,,JCN or Pointer-to-Connection-Block 2/ 36 bit security value SCSLV R+1: failure, error code in AC 1 R+2: OK. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc6479.txt
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PHP Manual . ... Next . PHP supports 'C', 'C++' and Unix shell-style comments. ... php echo "This is a test"; // This is a one-line c++ style comment /* This is a multi line comment yet another line of comment */ echo "This is yet another test"; echo "One Final Test"; # This is shell-style style comment ?> ... You should be careful not to nest 'C' style comments, which can happen when commenting out large blocks. <?php /* echo "This is a test"; /* This comment will cause a problem */ */ ?> ...

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