... First, calculate percentages of amino acids in every column + contribution = 1.0 / len ( self . sequences ) + all_columns = [] + for position in range( len ( self )): + column _percentage = {} + for seq in self.body : + if self.body [seq][position] is not None : + aa = self.body [seq][position].code + else: + aa = None + if aa in allpy.data.amino_acids: + if aa in column _percentage.keys(): + ...

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• allpy: 62e38970ffa2
• allpy: b7b963287d31 lib/project.py
• allpy: 0ef1a722b738 lib/project.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа
• GML MatLab Camera Calibration Toolbox | Graphics and Media Lab
• GML MatLab Camera Calibration Toolbox | Лаборатория компьютерной графики и

SVETKA, a program for Analysis of Multiple Sequence Alignments . ... T his is a database of some analysed "model" alignments. These sets of amino acid sequences were taken from COGs database . ... Results of the analysis of "model" alignments are acceptable from the table below. Every alignment is called VAL xxxx , where xxxx is the number of the original COG (e.g. VAL1188 is obtained from COG1188 ). Alignment name . ... of sequences . Alignment length . Alignment quality . ...

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• Inquiry information || Rule of four sequences
• Inquiry information || Distances
• Inquiry information || Parsimony algorithm

... 2010-05-05 05:06 . 1.3K . ...

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• The Linnaean Collection of the Herbarium of Moscow State University: digital
• Index of /shipunov/ang/haptanthus/20100423_haptanthus

Application of the Quickhull algorithm's principles to the double description method" . Bastrakov S.I., Zolotykh N.Yu. The double description method known also as the Motzkin-Burger algorithm is a method for computing the general solution of a system of linear inequalities. ... The numerical results demonstrate a number of advantages of the proposed modification over the original double description method and (in many cases) over the Quickhull algorithm. ... PostScript (in Russian) (1.51MB) . ...

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• "A method of automatic constructing a model of a parallel program in terms of

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• Bioinformatics portal, Moscow State University
• GeneBee BLAST 2.2.8 Services Help
• GeneBee BLAST 2.2.22+ Services Help

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Introduction
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... Makefiles are included to rebuild the executable from the original sources with Open Watcom C/C++ compiler and utilities. ... Proposed directory for placement: /pub/os2/dev/misc Your name: Olafur Gunnlaugsson Email address: oli@audiotools.com Program contact name: Rob Hamerling Program contact email: robhamerling@gmail.com Program URL: http://www.robh.nl/picsoft.php#jalv2 Would you like the contact email address included in listings? yes Operating System/Version: OS/2 v3 and up or eComStation. ...

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• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/incoming/pcx2prn144.txt
• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/incoming/pcx2prn145.txt
• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/text-archives/jalv24q.txt

... Measurement of the MASS detectors parameters with mass program January 24, 2015 [112707] . MASS/DIMM electronics. ... Turbina-core(D): Dimm User Guide. ... N.Shatsky, V.Kornilov, The revision of the MASS/DIMM star catalogue. ... О.Возякова, В.Корнилов, Н.Шатский, Новое программное обеспечение прибора MASS/DIMM. ... V.Kornilov, N.Shatsky, S.Potanin, O.Voziakova, B.Safonov Preliminary results of astroclimate parameters measurements at the Sternberg 2.5m telescope installation site. ...

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... d ${empty_db} ]]; then ${ ghc _pkg} init ${empty_db} || die Failed to initialize empty global db fi echo $( ghc-libdir )/bin/ ghc -pkg --global- package -db=${empty_db} elif version _is_at_least 7.7.20121101 $( ghc - version ) ; then # the ghc -pkg executable changed name in grep "GHC Dynamic" | ... grep -q "thr" } # @FUNCTION: ghc-supports-smp # @DESCRIPTION: # checks if ghc is built with support for multiple cores runtime ghc-supports-smp() { $(ghc-getghc) --info | ...

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• http://mirror.msu.net/pub/gentoo-portage/eclass/gdesklets.eclass
• http://mirror.msu.net/pub/gentoo-portage/eclass/mercurial.eclass
• http://mirror.msu.net/pub/gentoo-portage/eclass/openib.eclass

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Programming - X11 Libraries Toolkits - Imlib
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SAI, graduates year 1982. ... Note: when just a 7-digit phone number is shown, it refers to a phone located in Moscow (international access 007-495). "+" in front of a number means that you must dial an international access code first (or just press "+" on your mobile phone keypad). ... 939-1672(work); . ... Ataev Sasha . 1-(703)-536-8881(home) (USA); . ... Bychkov Sergey . ... 1-(410)-740-8205(home), +1-(301)-286-2150(work) (USA); . ... 1-(412)-767-0332(home), +1-(412)-608-9339(mobile) (USA); . ...

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... Множественное выравнивание последовательностей. ... Ознакомление с программой Muscle. ... Выполнив команду: wossname alignment я посмотрела список программ EMDOSS, так или иначе связанных с выравниваниями: aligncopy Reads and writes alignments aligncopypair Reads and writes pairs from alignments consambig Create an ambiguous consensus sequence from a multiple alignment diffseq Compare and report features of two similar sequences distmat Create a distance matrix from a multiple ...

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PHP Manual . ... PHP 4 >= 4.0.3) mysql_fetch_assoc -- Fetch a result row as an associative array . ... Returns an associative array that corresponds to the fetched row, or FALSE if there are no more rows. mysql_fetch_assoc() is equivalent to calling mysql_fetch_array() with MYSQL_ASSOC for the optional second parameter. ... To access the other column(s) of the same name, you either need to access the result with numeric indices by using mysql_fetch_row() or add alias names. ... mysql_fetch_array . ...

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• str_rot13
• get_class
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Anchoring patterns and point mutations in pairwise alignments using AlignMe X-ray crystal structures have revealed that numerous membrane proteins, such as GPCRs or some secondary transporters, despite the lack of any detectable sequence similarity between them, still share very similar 3D structures. ... The novel feature allows the user to define any number of anchors with varying strength for improving the quality of pairwise alignments in challenging cases lacking notable sequence similarity. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/195.pdf

... Technique of supervision of solar atmosphere active formations with the Multichannel Flare Spectrograph. Consider in details now a method of observations of fast processes in solar chromosphere with Multichannel Flare Spectrograph (MFS) installed in Ondrejov Observatory (Czech Republic). ... The working spectral range lies between IR CaII 8542 A and K CaII 3870 A. To observe solar image on the spectrograph's slit a lens, narrow-band H-alpha filter (4) ("Daystar") and CCD-chamber are used. ...

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• HSFA 2 technical description Technical Details
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• Description of Data

... USER MAILING LIST . ... TAGGING FOR SPAM MAILS . ... spamassassin - extensible email filter used to identify spam . ... Mail :: SpamAssassin Spam detector and markup engine Mail :: SpamAssassin ::ArchiveIterator find and process messages one at a time Mail :: SpamAssassin ::AutoWhitelist auto-whitelist handler for SpamAssassin Mail :: SpamAssassin ::Bayes determine spammishness using a Bayesian classifier Mail :: SpamAssassin ::BayesStore Bayesian Storage Module Mail :: ...

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• Description of particles
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• fcp:rest:jobschema [THEP]

... Services . ... Services Web-development . Portfolio . ... Client : ACDI-CIDA . Launching date: 15.05.2002 . Short description: . ... URL: http://www.acdi-cida.ru . ... Client : Dashteam project . ... Specialized catalogue of russian agroresources on the Net "Agrorus" is a project of the Foundation for Agrarian Development Research (FADR). Development of the catalogue, originally supported by Eurasia Foundation, was started in 1997. ... URL: Site design was updated by client . ...

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• An International Consensus on Calcareous Paleosol Classification
• Commission on Paleopedology Discussions
• SPECIAL ISSUE OF CATENA «RECONSTRUCTION AND CLIMATIC IMPLICATIONS OF PALEOSOLS»