... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

Еще в разделе: (Показать все результаты (>6989) - mouse.belozersky.msu.ru/ )

• S : rm_systems

... The LanHEP input file is the sequence of statements, each starts with a special identifier (such as parameter, lterm etc) and ends with the full-stop ' . ... This section is aimed to clarify the syntax of LanHEP input files, i.e. the structure of the statements. ... Let us consider the LanHEP input files for the Standard Model with both the t'Hooft-Feynman and unitary gauges. ... LanHEP allows the user to define several keys , and use these keys to branch among several variants of the model. ...

Еще в разделе: (Показать все результаты (>1557) - theory.sinp.msu.ru/ )

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

Еще в разделе: (Показать все результаты (>248) - www.genebee.msu.ru/ )

• Databases

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

Еще в разделе: (Показать все результаты (>33) - mouse.genebee.msu.ru/ )

PHP Manual . ... The include() statement includes and evaluates the specified file. ... Basic include() example . ... Won't work; file.txt wasn't handled by www.example.com as PHP include 'http://www.example.com/file.txt?foo=1&bar=2'; // Won't work; looks for a file named 'file.php?foo=1&bar=2' on the // local filesystem. include 'file.php?foo=1&bar=2'; // Works. include 'http://www.example.com/file.php?foo=1&bar=2'; $foo = 1; $bar = 2; include 'file.txt'; // Works. include 'file.php'; // Works. ...

Еще в разделе: (Показать все результаты (>417) - oit.cmc.msu.ru/ )

• include_once
• require
• Control Structures

... annotate . ... To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. ... me@198 . 1 #!/usr/bin/make -f . dendik@486 . ... 3 DEB_AUTO_UPDATE_DEBIAN_CONTROL = yes . ... 8 include / usr / share / cdbs / 1 / rules / debhelper . ... 11 build / python - allpy :: . ... dendik@609 . ... dendik@607 . 15 - mkdir debian / bin . ... 19 > debian / bin / geometrical - core2 . ... 23 rm - rf debian / bin . ... 44 debian / . ...

Еще в разделе: (Показать все результаты (>60451) - kodomo.fbb.msu.ru/ )

• allpy: 4f53849b44f9 NEWS
• allpy: 4f53849b44f9 test/usecase1.py
• allpy: NEWS annotate

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

Еще в разделе: (Показать все результаты (>6347) - monkey.belozersky.msu.ru/ )

• Homeodomain numeration assumed
• ETS_hydrophobic_interactions
• About authors ot this complex

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

Еще в разделе: (Показать все результаты (>10) - npidb.belozersky.msu.ru/ )

SeqPup . SeqPup is a biological sequence editor and analysis program. It includes links to network services and external analysis programs. ... multiple sequence alignment and single sequence editors . ... Internet sequence analysis services by BOP and email methods . automatic multiple sequence alignment with ClustalW app . ... phylogenetic analysis of alignments with fastDNAml and LSADT apps . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

Еще в разделе: (Показать все результаты (>3772) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Chemistry, Biology Related - PomBase
• SAL- Programming - Languages Compilers - Rigal
• SAL- Programming - Languages Compilers - Titanium

... HelpOnMacros/Include . ... Include(pagename, heading, level, from="regex", to="regex", sort=ascending|descending, items=n, skipitems=n, titlesonly, editlink)>> . ... Text for the generated heading which will link to the included page (optional). level . ... Include the text of page FooBar in the current paragraph: <<Include(FooBar)>> . ... Sort the page list in descending order: <<Include(^FooBar/.*, , sort=descending)>> . Include a maximum of three pages: <<Include(^FooBar/.*, , items=3)>> . ...

Еще в разделе: (Показать все результаты (>151) - uneex.mithril.cs.msu.su/ )

• HelpOnParsers/ReStructuredText - UNИX

... HelpOnMacros/Include . ... Include(pagename, heading, level, from="regex", to="regex", sort=ascending|descending, items=n, skipitems=n, titlesonly, editlink)>> . ... Text for the generated heading which will link to the included page (optional). level . ... Include the text of page FooBar in the current paragraph: <<Include(FooBar)>> . ... Sort the page list in descending order: <<Include(^FooBar/.*, , sort=descending)>> . Include a maximum of three pages: <<Include(^FooBar/.*, , items=3)>> . ...

Еще в разделе: (Показать все результаты (>396) - uneex.lorien.cs.msu.su/ )

• HelpOnParsers/ReStructuredText - UNИX
• License agreement
• Platform-Dependent Conditionals

... Другие названия журнала: Advances in Space Research (includes Cospar Information Bulletin , Advances in Space Research(includes Cospar Information Bulletin) . ... Lipunov V. в журнале Advances in Space Research (includes Cospar Information Bulletin) . ... Sajid M. , Chechenin N.G. , Torres F.S. , Khan E.U. , Agha S. в журнале Advances in Space Research (includes Cospar Information Bulletin) , том 56, с. 314-324 DOI . ...