... help . ... 2 """Realign given part of alignment. ... 9 from allpy import protein . ... append_file ( open ( options . ... columns ) . 18 columns = alignment . columns [ options . ... from_alignment ( alignment , columns = columns ) . ... 28 parser = optparse . ... add_option ( "-i" , "--in-file" , . 30 help = "Input alignment file (in FASTA format)" ) . ... add_option ( "-o" , "--out-file" , . ... add_option ( "-b" , "--begin" , type = int , . ... 40 options , args = parser . ...

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• allpy: cd43d59c0dba
• allpy: utils/pool annotate
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... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Annotation title . General options . ... DotHelix options . ... threshold (4 to 50) . ... DNA/RNA Dayhoff Johnson Blosum 30 Blosum 50 Blosum 62 Pam 60 Pam 120 Pam 250 Gonnet 120 Gonnet 250 Gonnet 350 . Supermotif's options . ... Maximum number . ... FT fragment picture options . Max number of FT . ... Other options . ...

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• AliComp - GeneBee Alignment Comparison Help
• AliGraf - GeneBee Graphical Alignment Help
• AliComp - GeneBee Alignments Comparison - Advanced

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/fitcircle.html
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• http://xray.sai.msu.ru/~ivan/gmt/man/blockmode.html

Homepage: http://desandro.com/resources/jquery-masonry . ... Masonry is a layout plugin for jQuery. ... Whereas floating arranges elements horizontally then vertically, Masonry arranges elements vertically then horizontally according to a grid. ... Depending on the layout, you?ll most likely need to specify one option. ... Lorem ipsum dolor sit amet, consectetuer adipiscing elit. ... This topic: System > JQueryPlugin > JQueryMasonry . ... Ideas, requests, problems regarding Foswiki? ...

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• PatternSkinTheme < System < Foswiki

... Algorithm & . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). The analysis begins with a multiple alignment of a protein family. ... Predict SDPs only . Predict CPs only . Predict SDPs and CPs . Map a pre-identified list of SDPs and/or CPs onto a structure ...

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• SDPsite - Algorithm Format requirements
• SDPlight
• Algorithm

... To run the <LAYER> version of the example, select: flower.htm . ... However, if the page had several layers with absolute positions, and you wanted to place another layer in a relative position to one of the existing layers, you could use inline JavaScript to calculate the value for LEFT or TOP . ... In this example, there is really no need to use inline JavaScript to position the last flower layer, since you could just let the TOP value default to its natural value, as in the other flower layers. ...

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... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

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• Informational Options
• License options
• Debugging Memory Allocation in APR - Apache HTTP Server

... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

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... E-mail . ... Этот e-mail защищен от спам-ботов. Для его просмотра в вашем браузере должна быть включена поддержка Java-script . ... Ведущий специалист . ... Главный специалист . ...

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... The first options file is /etc/ppp/options, which is always scanned when pppd starts up. ... It allows each user to specify her own set of default options. A sample /etc/ppp/options file might look like this: # Global options for pppd running on vlager.vbrew.com auth # require authentication usehostname # use local hostname for CHAP lock # use UUCP-style device locking domain vbrew.com # our domain name The first two of these options apply to authentication and will be explained below. ...

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• Kernel Options in 1.0 and Higher
• Link Control Options
• Kernel Options in 1.1.14 and Higher

. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• About this project
• SDPpred
• Example of supporting positions

... Usage ---+++ <nop>JavaScript API Configuring Masonry is fairly easy. ... For layouts with elements that span multiple widths: <verbatim class="js"> $('#wrapper').masonry({ columnWidth: 200 }); </verbatim> For layouts with elements that span the same width: <verbatim class="js"> $('#wrapper').masonry({ singleMode: true }); </verbatim> ---+++ Foswiki integration All containers classified as =jqMasonry= will be processed by this plugin. ... This topic: System > JQueryPlugin > JQueryMasonry . ...

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All Firefly versions can take optional command line arguments. ... firefly [optional command line options in any order] [optional list of working directories] . ... The list of most widely used command line options is given below: . ... Disables validity check of the command line arguments (e.g., check for valid names of files and directories, etc...) passed to Firefly. ... However, if this option is not given, one must provide the list of working directories when running Firefly in parallel mode. ...

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. Some commands accept multiple options. These can be grouped together after a single hyphen: command -abc argument . A small number of commands require each option to be given separately. Check the command synopsis for a command to see how a command requires its options to be given. An option that takes an argument, such as the name of a printer or a filename is given separately. Examples .

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• Command options
• Change an option value temporarily
• Examples of commands

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression
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Option setting  Codon table: Universal Vertebrate mitochondria  Remove gaps, inframe stop codons : No Yes o Calculate KS and KA: No Yes (valid only if the input is a pair of sequences) (для того, чтобы получить значения KS и КА, необходимо в данном разделе отметить пункт Calculate KS and KA: Yes (valid only if the input is a pair of sequences))  Remove mismatches: (mismatched codons between protein and DNA) No ...

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• petri_dish: tk1.py annotate
• petri_dish: Bacteria.py annotate
• petri_dish: bacteria.py annotate

Электронная библиотека Попечительского совета . ... John C. Hull - Options, Futures, and Other Derivatives -Solution Manual . ... Название: Options, Futures, and Other Derivatives -Solution Manual . Автор: John C. Hull . ... Solutions to the Questions and Problems are in Options, Futures, and Other Derivatives 7e: Solutions Manual which is published by Pearson and can be purchased by students. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Henderson V., Hobson D.G. - Local time, Coupling and the Passport Option ::
• MacDonald M. - Excel for Starters: The Missing Manual :: Электронная библиотека

... Options for
<tt> mpirun
</tt> . ... mpirun [mpirun_options...] <progname> [options...] . mpirun _ options : - arch architecture specify the architecture (must have matching machines. arch file in ${MPIR_HOME}/bin/machines) if using the execer -h This help -machine machine name use startup procedure for machine name -machinefile machine-file name Take the list of possible machines to run on from the file machine-file ... Special Options for Nexus device: . ... Центры . ...

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• MPI arguments for the application program | PARALLEL.RU -
• Command-line arguments for
  <tt> mpirun
  </tt> | PARALLEL.RU -
• MPI_File_get_position | PARALLEL.RU - Информационно-аналитический центр по

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Type | ... Dict_init has one option: text value from dict_initoption and should return internal representation (structure) of dictionary. ... Arguments: pointer to HLPRSTEXT, pointer to query, pointer to option (as text pgsql's type) prs_lextype returns array of LexDescr (see wparser.h), describing types of lexem that can be returned by parser. =# \d pg_ts_cfgmap Table "public.pg_ts_cfgmap" Column | ... 0 Comments on Tsearch V2 in Brief This page is read-only View other revisions Administration . ...

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• Configuration Options
• Authentication Options
• Reference Clock Options