... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: 353379082202 allpy/block.py
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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• GeneDoc help

AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

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... PHP 4 >= 4.1.0) import_request_variables -- Import GET/POST/Cookie variables into the global scope . bool import_request_variables ( string types [, string prefix]) . Imports GET/POST/Cookie variables into the global scope. ... Note: Although the prefix argument is optional, you will get a notice level error, if you specify no prefix, or specify an empty string as a prefix. ... This will import GET and POST vars // with an "rvar_" prefix import_request_variables("gP", "rvar_"); . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• SDP home page
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• SVETKA, a program for multiple sequence alignments analysus

A program for automatic detection of aligned blocks in multiple protein alignment. Paste your alignment in fasta-format here: . ... The program works slow - it takes 8 seconds to process alignment of 6 sequences of length 500. The program's development is supported by Russian Foundation for Basic Research (grant 10-07-00685-a) and Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). ...

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NPG-explorer : a new tool for nucleotide pangenome construction and closely related prokaryotic genomes analysis Boris Nagaev2, Maxim Nikolaev2, Andrei Alexeevski 1 1,2,3* A.N.Belozersky Institute Of Physico-Chemical Biology and 2Faculty ... @gmail.com Moscow State University, Moscow 119991, Russia 3Scientific Research Institute of System Analysis (NIISI RAS), Moscow Genomes of closely related bacteria have highly similar sequences of orthologous ... Blocks are classified into four categories. ...

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... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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... Миграция из Outlook в Evolution . ... Evolution allows you to import old email and contacts so that you don't need to worry about losing your old information. ... Формат для хранения файлов календаря, который обычно используется Evolution, Microsoft Outlook, Sunbird и Korganizer. iCalendar или iCal (.ics): . ... Evolution/Mozilla/Outlook CSV/Tab (.csv, .tab): . ... Microsoft Outlook* and versions of Outlook Express after version 4 use proprietary formats that Evolution cannot read or import. ...

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Электронная библиотека Попечительского совета . ... Weiss K.D. - Building an import/export business . ... Название: Building an import/export business . Автор: Weiss K.D. Аннотация: . The fourth edition of Building an Import/Export Business is dedicated to the managers and staff of the United States Department of Homeland Security. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Кафедра общей экологии Биологического факультета МГУ им. М.В. Ломоносова и . ... Активные темы Список участников Поиск по форуму Помощь . ... Экологический Форум - Фундаментальная Экология : Предложения и замечания по сайту . Тема: Reported that imports often such luxury f . ... Cheap Hermes Bags Don skip out Hermes Bags !. ... Переход на форум -- Выберите форум -- О сайте "Фундаментальная экология" - Предложения и замечания по сайту Научные семинары - Научные семинары . ...

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XML-RPC HOWTO . ... Using XML-RPC with Java . ... XmlRpcClient server = new XmlRpcClient(server_url); // Build our parameter list. Vector params = new Vector(); params.addElement(new Integer(5)); params.addElement(new Integer(3)); // Call the server, and get our result. Hashtable result = (Hashtable) server.execute("sample.sumAndDifference", params); int sum = ((Integer) result.get("sum")).intValue(); int difference = ((Integer) result.get("difference")).intValue(); // Print out our result. ...

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... Next: Files Saving and Export Up: Operations with files Previous: Operations with files Contents Index . To open the file press button or choose menu command File/ Open . ... Menu command File/ Open the same as Menu button , permits to open not only scanning probe microscopy files, but also to import data from text ASCII files and Bitmap files (extension BMP). The data in text files must be put in three columns (X, Y and Z) for surfaces importing, or in two or one columns for curves importing. ...

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... Главная -> Фильмы -> Import/Export . ... Фильмы . ... Import/Export . ... Австрия 2007 . ... Две отдельные судьбы. ... Ольга, медсестра сљУкраины, бросает свою семью, чтобы искать лучшую жизнь наљЗападе иљв итоге работает уборщицей вљдоме престарелых вљАвстрии. ... Двое молодых людей, жаждущие начать новую жизнь, столкнулись сљсуровой реальностью. Двељистории ољпоисках счастья иљматериальной выгоды, ољтемных сторонах сексуальности иљсмерти иљо том, какљтрудно чистить зубы чучелу лисы. [ klepa ] . ...

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... (imageData).hexdigest() + self.__imageHash = sha1(imageData).hexdigest() self.__avatarCache = avatarCache def getImageHash(self): diff - Naur pyicqt-0.8.1.5 / src /contact.py p1// src /contact.py --- pyicqt-0.8.1.5 / src /contact.py 2010-06-07 12:16:43.000000000 + 0200 +++ p1// src /contact.py 2010-06-07 12:16:16.000000000 + 0200 @@ -8,7 +8,6 @@ import config from debug import LogEvent, INFO, WARN, ERROR ...

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Qbib . Qbib is a bibliography management system based on Qddb . ... Qddb database for fast and flexible searching and report generation. Import BibTeX .bib files; handles all standard and most common fields, as well as @string translation . Import .aux files to search results for quick export or review . ... Custom export options including author format and selection of fields to export . ... Home Site: . ... SAL Home | Database Systems | Utilities Other DBMS . ...

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... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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previous contents properties index . ... font-face, 1 , 2 , 3 , 4 , 5 , 6 , 7 . ... media, 1 , 2 , 3 , 4 . ... definition of, 1 . absolutely positioned element, 1 . ... all' media group, 1 . ... anonymous inline boxes, 1 . ... ascent' (descriptor), 1 . ... aural' media group, 1 . ... bitmap' media group, 1 . ... margin, 1 . ... continuous' media group, 1 . ... definition-src' (descriptor), 1 . ... font definition resource, 1 . ... font-family' (descriptor), 1 . ... font-size' (descriptor), 1 . ...

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• Standard Schoolhouse Rock Introduction Sequence
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... META TOPICPARENT . ... When forms are enabled for a web and selected in a topic, a single form appears in edit mode, and the contents are rendered as a table when viewed on the display page. ... Form input values are stored as TWikiMetaData ; all data is saved. ... Form Templates . ... saved as Meta Data . ... On upgrading from the previous TWiki, a Form Template topic has to be built for each web that used a Category Table, recreating the fields and values from the old twikicatitems.tmpl . ...

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