... diff . ... line diff . 1.1 --- a/ allpy / markups.py Tue Mar 06 16:08:49 2012 +0400 1.2 +++ b/ allpy / markups.py Tue Mar 06 20:29:34 2012 +0400 1.3 @@ -22,10 +22,13 @@ 1.4 global by_name 1.5 by_name = {} 1.6 for markup _ class in globals().values(): 1.7 - if hasattr( markup _ class , 'name') and hasattr( markup _ class , 'kind'): 1.8 - fullname = markup _ class .kind, markup _ class .name 1.9 - assert fullname not in by_name, Samenamed ...

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• allpy: 695cf9ab2293 allpy/markups.py
• allpy: 4349a1f31dd2
• allpy: 08d83a24befd allpy/markups.py

... The standard IUPAC one-letter codes for the amino acids are used. ... Ambiguities are indicated by listing the acceptable amino acids for a given position, between square brackets `[ ]'. ... If your pattern consists of one-letter amino acid codes only, without any ambiguous residues, you need not specify the '-', i.e. you can directly copy/paste peptide sequences into the text field. ... To search all sequences which do not contain a certain amino acid, e.g Cys, you can use <{C}*>. ...

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Geometric and Topological Structures Related to Universal Algebras Research Institute for Systems Research, Russian Academy of Sciences, 109280 Moscow, Russia M. I. Graev and A. V. Koganov Received December 23, 2002 Abstract. system is closed with respect to the operations and forms a semimodular lattice similar to the system of subspaces of a pro jective space. This structure enables one to extend the metric and topology from the system of generators of the A-system to the entire A-system in such a way