... help . ... files . ... _cores/pair_cores.py Tue Jul 12 23:57:18 2011 +0400 1.3 @@ -8,88 +8,86 @@ 1.4 from copy import copy 1.5 1.6 from protein_pdb import Alignment , Block, Monomer, Sequence 1.7 -from allpy import processors 1.8 +from allpy import processors, markups 1.9 import allpy .base 1.10 from html import html_template 1.11 +from allpy .structure import CachedDownloadPdb, cached_download_pdb 1.12 1.13 -def remove_monomers_without_structure(block): 1.14 - monomers ...

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• allpy: b556c96c6719 pair_cores/pair_cores.py
• allpy: 211330654df7
• allpy: b4edacb29fd9 test/usecase2.py

... Vertical alignment of cells and headers, set to "top" , "middle" , "bottom" or "baseline" . ... Table rules, set to "none" (no rules), "groups" (rules will appear between row groups and column groups only), "rows" (rules will appear between rows only), "cols" (rules will appear between columns only), "all" (rules will appear between all rows and columns). unspecified . ... Header cell text colour. "#ffffff" . ... Header cell background colour of a sorted column. the value of headerbg . ...

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• VarTABLE - TWiki - TWiki - (printable)
• VarTABLE - TWiki - TWiki
• %TOPICTITLE% (17 vs. 18) - TWiki

IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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• Global and Local Alignment of A.A Sequences
• Structure Alignment
• Alignment

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• Alignment example
• SDPpred
• Site Cluster

Routines can now be called with keyword arguments and can use default arguments, that means that some arguments can be given with keywords instead of position and some do not have to be given at all, in which case a standard or default value is used. ... IMPLICIT NONE INTERFACE SUBROUTINE SOLVE (A, B, N) INTEGER, INTENT (IN) : : N REAL, INTENT(OUT) : : A REAL, INTENT(IN), OPTIONAL : : B END SUBROUTINE SOLVE END INTERFACE REAL X ! ... You will use keyword arguments and default arguments so that . ...

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• Dos32Profile API
• Long description of example illustrating table row height calculations and
• Argument association

. Most commands are used together with one or more arguments. For some commands these arguments are optional; others require you to use them with an argument. If the argument contains an empty space then you must quote the argument. Commands become far more effective when used together with regular expressions . Examples .

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• Passing arguments to the shell
• Quoting command arguments
• Examples of using command arguments

... SYSTEM CALL : semop (); PROTOTYPE: int semop ( int semid, struct sembuf *sops, unsigned nsops); RETURNS: 0 on success (all operations performed) -1 on error: errno = E2BIG (nsops greater than max number ... EACCESS (permission denied) EAGAIN (IPC_NOWAIT asserted, operation could not go through) EFAULT (invalid address pointed to by sops argument ) EIDRM ( semaphore set was removed) EINTR (Signal received while sleeping) EINVAL ( ... The sops argument points to an array of type sembuf . ...

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• Using a swap space
• Alignment, font styles, and horizontal rules in HTML documents
• SYSTEM CALL: semctl()

... Class . ... FIELD | ... Nested classes inherited from class javax.swing.JDialog . ... Nested classes inherited from class java.awt.Dialog . ... Nested classes inherited from class java.awt.Window . ... Nested classes inherited from class java.awt.Container . ... Nested classes inherited from class java.awt.Component . ... private java.lang.String . ... Fields inherited from class javax.swing.JDialog . ... Fields inherited from class java.awt.Dialog . Fields inherited from class java.awt.Window . ...

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• : Class IndexIterator
• : Class AbstractNetcdf
• ArgumentsContainer.ArgumentsWriter

All Firefly versions can take optional command line arguments. ... firefly [optional command line options in any order] [optional list of working directories] . ... The list of most widely used command line options is given below: . ... Disables validity check of the command line arguments (e.g., check for valid names of files and directories, etc...) passed to Firefly. ... However, if this option is not given, one must provide the list of working directories when running Firefly in parallel mode. ...

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Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . ... Войти в систему . ... Feuerstein B. , Grum-Grzhimailo A.N. , Bartschat K. , Mehlhorn W. в журнале Journal of Physics B: Atomic, Molecular and Optical Physics , издательство Institute of Physics Publishing (United Kingdom) , том 32, ? ...

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• Berezhko E.G. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Matterstock B. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Huster R. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... Combined Guided Tracking and Matching with Adaptive Track Initialization . ... http://graphics.cs.msu.ru/en/publications/text/gc2005kgv2.pdf . ...

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... The author uses a model of the relations between the regional budget and budgets of municipal formations of Vladimir region, designing three distinct approaches to budget management: the alignment at the expense of grants (current methodology), the alignment at the expense of regulating taxes (proposed methodology) and alignment due to the replacement of grants deductions from the tax on incomes of physical persons (legislative approach). ... Public Administrarion". ...

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... X-Com key features (2) · Lightweight portable toolkit: ­ easy to install · Perl-based software · doesn't need administrator/root access ... must be written ­ simultaneous work of different platforms · joining Windows and Linux machines ­ distributed freely · BSD license X-Com basic requirements · Linux / Windows · Perl 5.8.0+ ­ for Windows: · Strawberry Perl (preferred) · ActivePerl · Open TCP port for Task initializing on server side Server part of the application 2. ... Portion request 6. ...

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• http://hpc.msu.ru/files/HPC/X-Com_tutorial.pdf

Nuclear Instruments and Methods in Physics Research B 245 (2006) 28­31 www.elsevier.com/locate/nimb Alignment dependence of the stopping effective charge of swift excited ions in the degenerate electron gas L.L. Balashova *, A.A. Sokolik Institute of Nuclear Physics, Moscow State University, 119992 Moscow, Russian Federation Available online 4 January 2006 Abstract The mation Li+ ion с 2005 dielectric theory of ... The same as Fig. 1(a) but for He neutral atom. v (a.u.) Fig. ...

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• http://danp.sinp.msu.ru/LIIWM/PRLett79_1997_1662NMKab.pdf

extra:main ]] . CompHEP . ... Script for including cuts, kinematics, or regularizations into batch.dat file . Script for CompHep cross-sections energy dependence calculation . ... When you done CompHep calculations for the process under study at one energy, you may easely get cross-sections energy dependence running script cs_energy_dep.pl . ... For every energy point the script modifies results/batch.dat file and runs CompHep script num_batch.pl to calculate given process cross-sections. ...

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Visual Images of Patriarch Nikon: An Electronic Gallery" consists of nearly fifty artistic depictions of patriarch Nikon and their full bibliographic citations. 2 The gallery evolved out of my dissertation "Patriarch Nikon's Image in Russian History and Culture" (Western Michigan University, 2004) and embodies my main argument that Nikon's resonance in Russian history remains largely unrecognized because traditional histories ? ... Nikon was officially rehabilitated shortly thereafter in 1682. ...

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Michael H. Shulman, 2012 (shulman@dol.ru) Is it possible to travel in Time? ... The first one is based on the common modern representations; I will call it "the W heeler-Feynman's argument". ... Additionally, we will consider a Time travelling using "wormholes" in spacetime. ... Geometrical argument It useful to note that in fact any travelling (and even rest state) turns out to be the travel in Time, since the stream of Time is the more general process in the Universe . ... Outside of our Universe? ...

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• http://temporology.bio.msu.ru/EREPORTS/shulman_why.pdf

View Online / Journal Homepage / Table of Contents for this issue Rotational mobility of guest molecules studied by method of oriented spin probe Andrey Kh. ... The method is based on consideration of the EPR spectra of stable free radicals with anisotropic magnetic parameters, commonly nitroxides. ... The temperature dependence of the eective magnetic parameters below T is observed in experiments.15,16 g Phys. Chem. ... Temperature dependence of obtained eective magnetic parameters is shown on Fig. ...

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• Спецкурсы кафедры "Химическая энзимология. Основы биоинформатики и

... Loskutov, and E. V. Ryadchenko Presented by Academician A.R. Khokhlov April 22, 2005 Received April 26, 2005 The problem of the identification and biological significance of chromosome fragments and complete genomes is approached on the basis of the representation of a sequence of DNA nucleotides as a two-dimensional walk. ... However, as applied to DNA, functional and structural fragments of a chromosome may be distinguished by a typical walk "pattern" only for a sufficiently large number of units....

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... inverse problems for mathematical physics equations and their applications in geophysics, electrodynamics, optics, medicine; . ... Differential equations by Prof. Denisov, Prof. Dmitriev, Prof. Razgulin, 64 lecture hours and 64 seminar hours, 3rd and 4th semesters. ... Equations of mathematical physics by Prof. Denisov and Prof. Zakharov, 32 lecture hours and 32 seminar hours, 5th semester. ... Inverse problems of mathematical physics by Prof. Dmitriev, 32 lecture hours, 8th semester. ... CMC MSU т?...

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