S .. ... SNP regions in the dataset are 21bp fragments of the genome containing SNP in the middle position . ... Word frequencies in SNP regions of the human genome (zip file, 66 MB) . ... Word frequencies in SNP regions of the human genome (xls file, 1.2 MB) . The file contains the frequency of each word of length 1, 2, 3, 4 or 5 in flanks of SNP regions for several criteria of SNP selection. These frequencies are compared to the frequencies of the same words in the complete human genome . ...

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• Nhunt: program for nucleic acid sequence similarity search

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPpred

... Each record consists of type name, header and optional + contents. Type name is a line, containing just one word, describing the + record type. ... It has been handled in read_payload. + pass + + def read_records( self , alignment ): + Read records and return them as a list of dicts. + for line in self . file : + if line.strip() == : + continue + yield self .read_ record ( alignment , line) + + def read_ record ( self , alignment , type ): + Read record headers and ...

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• allpy: allpy/fileio.py diff
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... 3.0.4 - 3.0.18 only, PHP 4 >= 4.0.0) imap_fetch_overview -- Read an overview of the information in the headers of the given message . array imap_fetch_overview ( int imap_stream, string sequence [, int flags]) . ... mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $overview = imap_fetch_overview($mbox,"2,4:6",0); if(is_array($overview)) { reset($overview); while( list($key,$val) = each($overview)) { print $val->msgno . ... val->subject . ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• The /etc directory
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The QKeyEvent class contains parameters that describe a key event. ... QKeyEvent  ( int type, int key, int ascii, int state )  . ... void  accept  ()  . ... Key events occur when a key is pressed or released when a widget has keyboard input focus. A key event contains a special accept flag which tells whether the receiver wants the key. ... Constructs a key event object. ... Sets the accept flag of the key event object. ... Clears the accept flag parameter of the key event object. ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• S : rm_systems
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... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• ETS_main
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• HTH3_numeration_assumed

... Class . ... public class Schema . ... This is a set of ProtoVariable, the DimensionSet which is the union of the Dimensions used, and any global Attributes. ... contains (java.lang.String name) . ... Returns the set of attributes associated with this, also know as the "global" attributes. ... a new Array containing the elements of this set. public ProtoVariable get (java.lang.String name) . ... If a different ProtoVariable with the same name, was in the set, it is returned, otherwise null is...

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• API Help
• : API Help
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... Thanks for downloading DEMONS.ZIP, which contains the following MIDI files: 1) DEMON21T.MID - This is the "21-track" version of DEMONS. This composition contains numerous patch changes which are embedded in various tracks. For those of you who like to assign your own sounds to MIDI tracks, DEMON21T allows you to do this with minimal hassle, because they're split out allowing you to easily find the patch changes. ... 2) DEMON16T.MID - This is the "16-track" version of DEMONS. ...

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• Conformance: requirements and recommendations

Microbial composition and metabolic potential development in microbial fuel cells during wastewater treatment Olga Tsoy Institute for Information Transmission Problems (Kharkevich Institute ), Bolshoy Karetny per. 19, build.1, Moscow 127051 Russia Okinawa Institute of Science and Technology, 19191 Tancha, Onnason, Kunigamigun, Okinawa , Japan 9040495 tsoy.v.olga@gmail.com Larisa Kiseleva Okinawa ... To estimate the biodiversity in MFC samples we used Metaxa 2 for small rRNA prediction. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/39.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf

Sequin . Sequin is a program designed to aid in the submission of sequences to the GenBank, EMBL, and DDBJ sequence databases. ... http://www.ncbi.nlm.nih.gov/Sequin/ . ... Other Packages: Yes, ftp://ncbi.nlm.nih.gov/sequin/ . ... None . ... ftp://ncbi.nlm.nih.gov/sequin/ . ... User Comments: . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . Comments? SAL@KachinaTech.COM . Copyright 1995-2001 by Herng-Jeng Jou . ...

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• SAL- Computer Graphics, Images Signals . Image Viewers, Conversions
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• Zen: Tsearch2WhatsNew

... Directives | ... Apache HTTP Server Version 2.0 . ... Directives in the configuration files may apply to the entire server, or they may be restricted to apply only to particular directories, files, hosts, or URLs. This document describes how to use configuration section containers or .htaccess files to change the scope of other configuration directives. ... Location> . ... Directives enclosed in a <Directory> section apply to the named filesystem directory and all subdirectories of that directory. ...

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• Terms Used to Describe Directives - Apache HTTP Server
• Apache mod_rewrite Introduction - Apache HTTP Server
• Terms Used to Describe Modules - Apache HTTP Server

Each row in the Particles Table describes a particle - anti-particle pair. ... 2*Spin for a doubled particle spin: 0 for scalar, 1 for spinor and 2 for vector particles. ... In this case the anti-particle "A+" is transformed by conjugated representation. ... Aux for an auxiliary field which allows to modify particle propagators. ... spin 0 case: . ... Zero mass vector particle must be marked as a gauge one using the Aux field (see below). ... is permitted for vector ( 2*spin=2 ) particle. ...

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• The problem
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IEN-74 Sequence Number Arithmetic William W. Plummer Bolt Beranek and Newman, Inc. ... A basic concept is that of a "window", a range of sequence numbers which begins at a "left" pointer and ends at a "right" pointer. ... Numbers | ... Left Right Note that Left is the the first number within the segment. ... The CheckWindow Function Because the sequence number space is actually a ring and arithmetic is done modulo 2**32, there is no concept of one sequence number being greater (or less) than another. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc1110.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc4304.txt

... Белок состоит из одной цепи, длина которой 249 аминокислотных остатков. ... A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. ... The 718,122 base pair sequence of the Escherichia coli K-12 genome corresponding to the region from 12.7 to 28.0 minutes on the genetic map is described. ... The complete genome sequence of Escherichia coli K-12. ... Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. ...

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• http://kodomo.fbb.msu.ru/~ramil.mintaev/projects/CLPB_ECOLI/abstract.txt
• UniProt fields
• SwissProt fields

Each Apache configuration directive is described using a common format that looks like this: . ... This indicates the format of the directive as it would appear in a configuration file. This syntax is extremely directive-specific, and is described in detail in the directive's definition. ... If the directive has a default value ( i.e. , if you omit it from your configuration entirely, the Apache Web server will behave as though you set it to a particular value), it is described here. ...

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• How Directory, Location and Files sections work
• Definitions of terms used to describe Apache modules
• Apache module mod_auth_digest

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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Graphite-bearing dolomite carbonatites in Newania, Western India . ... Newania certainly fits most of the criteria for a direct derived carbonatite magma; the key mineralogical features of the Newania carbonatites as mantle-like carbonatites are presence of magnesite, graphite and Cr-rich magnetite. Magnesite is an early crystallizing phase. ... The Newania dolomitic carbonatites are fine- to medium-grained, massive and banded rocks containing crystals and grains of amphibole and apatite. ... Fig. ...

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• http://geo.web.ru/~ariskin/docs/papers/d97_099.pdf
• http://geo.web.ru/conf/alkaline/2009/Solovova.htm
• http://geo.web.ru/conf/alkaline/2009/Costanzo.htm