... Implemented allpy.base.Alignment row/column model: methods rows(), *_as_lists() . ... 1.1 --- a/ allpy /base.py Thu Dec 16 18:35:56 2010 +0300 1.2 +++ b/ allpy /base.py Thu Dec 16 18:51:05 2010 +0300 1.3 @@ -199,6 +199,9 @@ 1.4 self.sequences = [] 1.5 self.columns = [] 1.6 1.7 + # Alignment modification methods 1.8 + # ============================== 1.9 + 1.10 def append_ sequence (self, sequence ): 1.11 Add sequence to alignment . 1.12 1.13 @@ -218,6 +221,9 @@ 1.14 self.columns[j][seq] =...

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• allpy: 9847bd92b889
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Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Improvement of Java type compiler using in language independent remote process calls in KBase project. 09/2011 ­ present: Moscow State University, Dept. of Bioengineering and Bioinformatics (Russia) Scientific Research Java developer and lecturer Enhanced the CAMPS web resource (http://webclu.bio.wzw.tum.de/CAMPS2.0/) that enables multiple classification of transmembrane proteins. ... Developed web based UI for visualization of a graph of transmembrane protein families. ... Sutormin RA, Mironov AA. ...

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... Foswiki::Cache::BDB - Implementation of a Foswiki::Cache using BerkeleyDB . See Foswiki::Cache for details of the methods implemented by this class. Foswiki::Cache::DB_File - Implementation of a Foswiki::Cache using DB_File. ... Foswiki::Cache::FileCache - Implementation of a Foswiki::Cache using Cache::FileCache. ... ObjectMethod genkey($string, $key) $key . ... ObjectMethod get($key) $object . ... This topic: System > WebHome > ReferenceManual > DeveloperDocumentationCategory > PerlDoc . ...

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... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• About this project
• Inquiry information || Parsimony algorithm
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Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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Cycle Contraction in Oriented Graphs / Nalivaiko P.V. // Vestnik Moskovskogo Universiteta. Seriya 1. Matematika. Mekhanika. ...

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... Method of recursive sequences in associated liquids theory . ... In case of chain association the comparison of RS-method with earlier developed matrix technique is performed. ... Moscow University Chemistry Bulletin . 2011, Vol. ... 3, P. 175 . Copyright (C) Chemistry Dept., Moscow State University, 2002 . ... Copyright (C) Chemisty Department of Moscow State University . ... Web-design: Copyright (C) MIG and VVM . ...

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... quantum optics - different types of the light interference, . ... Another branch of my activity covers the problem of biphoton interference (1997-). ... Also we developed the effective interferometric protocols to generate some specific quantum states of light (the Bell states) in the most common case: broad spectrum of the pump (in particular for the femtosecond laser), any type of phase-matching (either type-I or type-II), and arbitrary length of nonlinear crystals. ... QUANTUM TELEPORTER . ...

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ABACUS . ABACUS (A Branch-And-CUt System) is a software system which provides a framework for the implementation of branch-and-bound algorithms using linear programming relaxations that can be complemented with the dynamic generation of cutting planes or columns (branch-and-cut, branch-and-price, branch-and-cut-and-price). ... ABACUS is designed both for general mixed integer optimization problems and for combinatorial optimization problems. ... SAL Home | Numerical Analysis | ...

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... Scientific Laboratories . ... Main Science and education Scientific Laboratories Laboratory of solid-state lasers and coherent spectroscopy . ... The first experiments in the laboratory of solid-state lasers and coherent spectroscopy were done in 1974-1975 years. ... In 1980, the laboratory began more complex experiments on the base of picosecond lasers, namely experiments realizing nonstationary picosecond CARS of molecular gases (CARS-coherent antiStokes Raman scattering). ...

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... A system for the automated finding of inefficiencies and errors in parallel programs" . ... Antonov A.S., Voevodin Vad.V., Zhumatii S.A., Nikitenko D.A., Stefanov K.S., Shvets P.A. The first version of a system for the automated finding of inefficiencies and errors in parallel programs is considered. The developed algorithms devoted for the automated finding of logic and semantic errors in MPI parallel programs are implemented in this system. ...

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Bc J / (Bs , Bs ) + n Decays A. Berezhnoy , A. Likhoded, A. Luchinsky 27.09.2011 A. Berezhnoy , A. Likho ded , A. Luchinsky Bc J / (Bs , Bs ) + n Decays Aims of research To estimate the branching ratios for the decays Bc J / (Bs , Bs ) + n To develop the package for simulation these decays within standard LHCb software GAUSS A. Berezhnoy , A. Likho ded , A. Luchinsky Bc J / (Bs , Bs ) + n ... R ё Aµ = J / c µ 5 b Bc = Ї b c Bc c J / Figure: Diagram for Bc J / + n decay. ...

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... still have difficulty on line ending at end of sequences, consequence of doing a line based diff . rcstext ::= admin {delta}* desc {deltatext}* admin ::= head {num}; { branch {num}; } access {id}*; symbols {sym : num}*; locks {id : num}*; {strict ;} { comment {string}; } { expand {string}; } { newphrase }* delta ::= num date num; author id; state {id}; branches {num}*; next {num}; { newphrase }* desc ::= desc string deltatext ::= num log string { newphrase }* text string num ::= {digit | ... num | ...

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LIB-DVM library. Preliminary design . ... Lib-DVM is Run-Time System for DVM-programs execution. A parallel Fortran DVM (or C-DVM) program is translated to the program in the standard Fortran 77 (or C) language extended by Lib-DVM function calls, and to be executed according to SPMD model on the each processor program is assigned to the task. ... Input of the parameters, controlling the operating of Run-Time System, DVM debugger and the accumulation subsystem of the execution characteristics. ...

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... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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The QGManager class provides one-dimensional geometry management. ... void  setBorder  ( int b )  . ... bool  add  ( QChain * destination, QChain * source, int stretch = 0 )  . bool  addWidget  ( QChain *, QWidget *, int stretch = 0 )  . bool  addSpacing  ( QChain *, int minSize, int stretch = 0, int maxSize = unlimited )  . bool  addBranch  ( QChain * destination, QChain * branch, int fromIndex, int toIndex )  . ... Widgets are organized in chains, which can be parallel or serial. ...

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... Help/Guide . About Trac . ... Previous Changeset . Next Changeset . ... 7 added . 4 deleted . body.py (deleted) . game.py (deleted) . tanchiki.py (added) . tanchiki/__init__.py (added) . tanchiki/body.py (added) . tanchiki/game.py (added) . ... tanchiki/user.py (added) . tanchiki/vector.py (added) . user.py (deleted) . vector.py (deleted) . Note: See TracChangeset for help on using the changeset viewer. ... Powered by Trac 0.12.5 . ...

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• Global and Local Alignment of A.A Sequences
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... Second-year students classes . ... The course offers profound description of popular techniques of parallel programming such as OpenMP and MPI. ... Rapid growth of productivity of the modern computing systems is achieved by using parallel processors and multicore systems. ... As a result, by the and this course, students acquire knowledge about the popular parallel programming techniques, knowledge of modern high-performance computing systems and practical skills to work with them. ... Moscow: Binom...

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