IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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. SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins .

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: df624c729ab5 allpy/markup.py

... Online Services | ... Construct your query and output by sequental openings of needed fields. One output field must be selected (not be blank) at least. ... Query parameters: . Select for output . ... Energy (keV) . ... Y D H M S MS US NS PS FS AS EV KEV MEV or Stable . ... Energy of the ?-ray (keV) . ... Energy parameters of nucleus (B , Alpha energy, N, P separation energy) . ... Neutron separation energy (keV) . Proton separation energy (keV) . ... Excited energy(keV) . ...

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Computer tool for gene expression data processing and correlation analysis Anastasia M. Spitsina, Novosibirsk State University, 630090, Novosibirks, 2 Pirogova Str. , anastasia.spitsina@gmail.com Natalya ... databases (BioGPS (http://biogps.org/), GEO NCBI (http://www.ncbi.nlm.nih.gov/geo/)) has accumulated a large body of experimental data obtained using DNA microarrays ... So the aim of this work was to develop and improve own program for data processing and analysis of gene expression. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/39.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/104.pdf

... REQUIRED: Yes # Options: on|off #CookieAuth # CookieAuth_DBhost: Hostname or IP of the host where MySQL is running on. ... REQUIRED: Yes # Options: <password> #CookieAuth_DBPassword # CookieAuth_UsernameField: Field in MySQL table where username of session is stored. ... REQUIRED: Yes # Options: <fieldname> #CookieAuth_UsernameField # CookieAuth_SessnameField: Field in MySQL table where session name is stored. ... With this option set you can # redirect the client to another URL. ...

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BIRD SPECIES DATABASE . of the Arctic Birds Breeding Conditions Survey . ... Queries . View list of species . ... Get list of species, for which data are available by pushing "Query" button below "View list of species" invitation. Latin name of a species can be copied from the list to the "Species name" field or typed-in there (but exactly as it appears in the species list). ... Query results will be tabulated in the window below the map, and can be browsed through or copied. ...

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• ARCTIC BIRDS SPECIES DATABASE INTRODUCTION

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• Abstract (Invited)
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... A UNIX system has a lot of daemons. a database is the name given to the combination of a program that can manipulate data, together with the data that it acts upon. a record is a set of data about a person or item. Name, telephone number and postcode is an example of such a set. a field is one part of that record; the postcode for example. a delimiter character separates each field from the field preceding it and the field that follows it. ...

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Электронная библиотека Попечительского совета . ... Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . ... Название: Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . Автор: Brown S.M. Аннотация: . A practical overview of bioinformatics, for researchers. ... Also discusses and evaluated programs for PCs, the Internet, and mainframes. DLC: Bioinformatics. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... IPSFILES= $( HOME )/ ITRANS /lib/devnac.ps $( HOME )/ ITRANS /lib/ itrans .pro # ----------------------------------------------------------- # Rules to convert a .s file to . itx to . tex to . dvi to .ps # Note that the rules delete all the temporary files--- # I directly send the output file to the printer or the screen--- # modify these lines as required, if you need to look at the temp files. .s.ps: cat $(ISHDR) $*.s $*. itx ...

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... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... We found that automatic models are significantly worse at predicting attention than even single-observer eye tracking. We propose a semiautomatic approach that requires eye tracking of only one observer and is based on time consistency of the observer?s attention. ... Gitman Y, Erofeev M, Vatolin D, Bolshakov A, Fedorov A. Semiautomatic Visual-Attention Modeling and Its Application to Video Compression . ...

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Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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. ЭКОЛОГИЧЕСКАЯ ИНФОРМАЦИЯ . WEB- ориентированная библиографическая база данных .

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... Faculty of Biology . EEG Records Databases [ <<< ] . EEG of healthy adolescents and adolescents with symptoms of schizophrenia . EEG Database Description . There are two EEG data archives for two groups of subjects. ... Each TXT file contains a column with EEG samples from 16 EEG channels (electrode positions). ... First 7680 samples represent 1st channel, then 7680 - 2nd channel, ets. The sampling rate is 128 Hz, thus 7680 samples refer to 1 minute of EEG record. ...

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• EEG Databases Links

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19. BAFIZ

20. http://geo.web.ru/conf/alkaline/2009/Solovova.htm