... 14, 1272-1280, 1993 1TC3 REM F.Eisenhaber et al., ... 1TC3 ASG PRO C 202 1 T Turn 360.00 -159.31 171.0 1TC3 ASG ARG C 203 2 T Turn -71.80 -17.71 261.7 1TC3 ASG GLY C 204 3 T Turn -146.90 174.69 47.7 1TC3 ASG SER C 205 4 T Turn -68.78 153.59 85.2 1TC3 ASG ALA C 206 5 C Coil -71.89 158.78 74.1 1TC3 ASG LEU C 207 6 C Coil -72.77 127.42 9.4 1TC3 ASG SER C 208 7 C Coil -71.36 154.20 45.3 ...

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... Другие названия журнала: Fatigue & Fracture of Engineering Materials & Structures . ... 2003 Stress and fracture analysis in periodic contact problem for coated bodies . Goryacheva I.G. , Torskaya E.V. в журнале Fatigue and Fracture of Engineering Materials and Structures , издательство Blackwell Publishing Inc. ...

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... Secondary structure . ... Более подробно рассмотрен участок 898-1074 цепи B: . ... Chain B: --S1-H1-S2-H2-H3-S3-H4-H5-H6-H7-S4 . H8-H9-S5-H10-H11-H12-S6-H13-H14-H15;--H16 . H17-S1-H18-H19-S2-H20-H21-S3-H22-H23-S4-S5 . H24-S6-H25-S7-S8 -S9-H26-S10-S11-H27-S12 . ... H17-H18-S9-H19-H20-H21-H22-H23-H24-S10-H24-H25 . ... ChainC:-S1-H1-S2-H2-H3-H4-H5-H6-H7-H8-H9-S3-H10 . S4-H11-S5H12-H13-H14-S6-H15-H16-S7-S8-H17-H18 . ...

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• Report1/Term1/2008
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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK.sequences_chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first Sequence .pdb_files added to store information about pdb file for each ... monomers = monomers...

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... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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RNA Tertiary Structure Modelling . ... Two steps to fold coarse-grained model of RNA tertiary structure . ... fill in RNA secondary structure form with CT format (also with pseudoknots); . ... push "Finish Step #1" button to obtain secondary and intermediate* structures. * intermediate structure is the structure with minimum of "free energy" contains formed helixes and stacking, but without tertiary interactions . RNA secondary structure form . ... some useful RNA secondary structure databases: . ...

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The database of RNA secondary structure elements E.F. Baulin, Institute of Mathematical Problems in Biology, Pushchino, Russia, Higher Schoo l of Economics, Moscow, Russia ... Russia, Higher Schoo l of Economics, Moscow, Russia, mroytberg@lpm.org.ru We propose a new definition of the loop, which on the one hand is a generalization of the definition of Mathews-Turner [1], and on the other hand allows to divide into loops an arbitrary secondary ...

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Internet Engineering Task Force (IETF) D. Eastlake 3rd Request for Comments: 7319 Huawei BCP: 191 July 2014 Category: Best Current Practice ISSN: 2070-1721 IANA Considerations for Connectivity Fault Management (CFM) Code Points Abstract IEEE 802.1 has specified Connectivity Fault Management (CFM) Operations, Administration, and Maintenance (OAM) facilities. ... This document specifies the IANA considerations for the assignment of values from these blocks. ... IANA Considerations .. ...

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... Computer software has been developed for crystal chemistry analysis of arrangement of molecules in organic crystals on the basis of concepts worked out in the studies conducted by P.M.Zorky et al. ... The standard crystal chemistry analysis includes: . ... Constructing various graphic representations of the crystal structure and of its fragments, which clearly demonstrate arrangement of molecules, in particular, constructing representations of the most close molecule-molecule contacts. ...

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Nonlinearity of Media and Structures, Nonlinear Testing . ... R.Guyer (University of Massachusetts, Hasbrouck Laboratory, Amherst, Massachusetts, USA); B.Capgrosso-Sansone (Los Alamos National Laboratory, Los Alamos, USA) . ... I.B.Esipov, O.B.Ovchinnikov (N.N. Andreyev Acoustics Institute, Moscow, Russia) . ... A.S.Voznesensky (Moscow State Mining University, Moscow, Russia); M.N.Tavostin, Yu.L.Filimonov (Podzemgazprom Ltd, Moscow, Russia) . ... Nonlinear Acoustic Detection of Cracks . ...

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• Abstract
• AUTHOR : Kazakov G
• AUTHOR : Kotelyanski I

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• APPLICATIONS: Theoretical Physics | Moscow University Supercomputing Center
• APPLICATIONS: Engineering Sciences and Mechanical Engineering | Moscow
• APPLICATIONS: High Molecular Weight Compounds | Moscow University

... 5DPK structure . Page of complex: 5DPK . Home Browse Download Help About Us . ... PDB ID . ... MUTY ADENINE GLYCOSYLASE BOUND TO A TRANSITION STATE ANALOG (1N) PAIRED WITH D(8-OXOG) IN DUPLEXED DNA TO 2.2 A . ... View in . ... Protein chains: . DNA chains: . ... 5dpk.pdb1.pdb . ... Pfam domains . ... Download file with secondary structure created by Stride . 5dpk.pdb1.pdb: [ download sequences in FASTA format ] . ... Click "SHOW" for view sequence . ... NPIDB team 2003 - 2016 . ...

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