Histone-like proteins from archaea beta-Glucosyltransferase (DNA-modifying) C-terminal domain of RNA polymerase alpha subunit CAP C-terminal domain -like DNA repair glycosylase, 2 C-terminal domains DNA repair protein MutS, domain I DNA-binding protein LAG-1 (CSL) DNA-binding protein LAG-1 (CSL) Endonuclease III Group I mobile intron endonuclease Intein ( protein splicing domain ) Intein ... Restriction endonuclease FokI, C-terminal (catalytic) domain . ...

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• SCOP famyli: Restriction endonuclease BamHI
• SCOP famyli: Restriction endonuclease BglII
• SCOP famyli: Restriction endonuclease PvuII

... Interaction classes . Families of interaction class . Classes of protein-DNA interaction of SCOP families . ... CAP C-terminal domain-like . SSM . middle . ... high . ... KorB DNA-binding domain-like . ... Restriction endonuclease BglII . ... Middle domain of MutM-like DNA repair proteins . ... DNA-binding N-terminal domain of transcription activators . ... Recombinase DNA-binding domain . ... Viral DNA-binding domain . ... p53 DNA-binding domain-like . ... NPIDB team 2003 - 2016 . ...

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... List of solitary restriction endonucleases in complete prokaryotic genomes . List of groups of orthologous R-M systems. List of all analyzed genomes. Contains those orthologous groups that include at least one separated R-M system . R-M orthologous group ID . REs alignments . MTases alignment . Group 1 . ...

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Электронная библиотека Попечительского совета . ... Pingoud A.M. - Restriction Endonucleases . ... Название: Restriction Endonucleases . Автор: Pingoud A.M. Аннотация: . ... The best known representatives, the orthodox type II restriction endonucleases, are homodimers which recognize palindromic sequences, 4 to 8 base pairs in length, and cleave the DNA within or immediately adjacent to the recognition site. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• McFadden G., Moyer R. - Poxvirus Secreted Chemokine-binding Proteins ::
• Поиск книг, содержащих Сужение функций (restriction of function) :: Электронная
• Поиск книг, содержащих Restriction of a partial function :: Электронная

... A protein whose binding to Na,K-ATPase is regulated by ouabain. ... Immunoprecipitation of Na,K-ATPase from kidney homogenate by antibodies against alpha1-subunit results in the precipitation of several proteins together with the Na,K-ATPase. A protein with molecular mass of about 67 kD interacting with antibodies against melittin (melittin-like protein, MLP) was found in the precipitate when immunoprecipitation was done in the presence of ouabain. ...

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• [Heart fatty acid binding protein in patients hospitalized because of worsening
• [Levels of fatty acid binding protein before and after direct current
• [Prognostic significance of heart fatty acid binding protein in patients with

Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . ... Войти в систему . ... Другие названия журнала: Calcium Binding Prot . ... Bazhin A.V. в журнале Calcium Binding Proteins , издательство Landes Bioscience (United States) , том 3, с. 22-24 . ...

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• Proteins: Structure, Function and Bioinformatics - журнал | ИСТИНА -
• Pingoud V. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Schierling Benno - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

... we show that the comparison between the calculated and observed numbers of the most ``fragile'' (from the point of view of the binary evolution scenario )   galactic binary types (such as X-ray low-mass X-ray binaries (LMXB), cataclysmic variables (CV),   Be-stars   with compact companions, relative number of visible binary radiopulsars   with normal and compact secondary components) impose certain constraints on the feasible initial ... Phenomenological Kick Velocity . ...

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• Basic Observational Data for Determination of f(q) and

... TWiki allows you to define restrictions of who is allowed to view a TWiki web, make changes to topics or attach files. ... Access control is based on users and groups. ... A group topic name must end in .. ... Set GROUP = < list of users and groups > . Set ALLOWTOPICCHANGE = < list of users and groups > . ... When a user accesses a web where you enabled view restriction, TWiki will redirect from the view script to the viewauth script once (this hapens only if the user has never edited a topic). ...

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• %TOPICTITLE% (11 vs. 12) - TWiki
• %TOPICTITLE% (10 vs. 11) - TWiki
• %TOPICTITLE% (6 vs. 7) - TWiki

Computation of contribution from the cavity effect to protein-ligand binding free energy" . Grigoriev F.V., Jabin S.N., Romanov A.N., Sulimov V.B. Some results of the study of the cavitation effect, which provides an essential part of hydrophobic interactions due to the formation of protein-ligand complexes, are discussed. ... The main contribution to the cavitation effect is due to the annihilation of the cavity of the ligand. ... PostScript (in Russian) (14.1MB) . PDF (in Russian) (697KB) . ...

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• "A synthesis of simplex and linear correction methods for linear optimization
• "Calculation of molecular complexation free energy by thermodynamic integration

. Directories cannot be moved from one file system to another.

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list of Eubacteria domains composed the orthologuos groups of the set 1 Pfam AC Pfam ID Description PF00035 dsrm Double-stranded RNA binding motif PF00113 Enolase_C Enolase, C-terminal TIM barrel domain PF00119 ATP-synt_A ATP synthase A chain PF00162 PGK Phosphoglycerate kinase PF00164 Ribosomal _S12 Ribosomal protein S12 PF00177 Ribosomal _S7 Ribosomal protein S7p/S5e PF00181 Ribosomal _L2 Ribosomal Proteins L2, ...

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• http://mouse.genebee.msu.ru/phylogeny/Domains_sets2-4.doc
• Align tool for DNA-protein complexes
• Comparison of protein phylogeny reconstruction methods

UNIPROT:HBAD_CHICK P02001 P02001 Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain) (Alpha-D- globin). ... 3D-structure Direct protein sequencing Heme Iron Metal-binding Oxygen transport Transport 141 UNIPROT:HBAD_COTJA P30892 P30892 Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain) (Alpha-D- globin). ... Direct protein sequencing Heme Iron Metal-binding Oxygen transport Transport 141 UNIPROT:HBAD_MELGA P81024 P81024 Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain) (Alpha-D- globin). ...

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• http://kodomo.cmm.msu.ru/~xenia_l/wgetz.fasta
• Starovoytova's page/Второй семестр/SRS
• Student's numbers

... add *args binding to utility class Binder . ... 1 import base . 2 import data.codes . ... 4 import protein . ... 6 class Monomer ( base . Monomer ): . 7 """Protein monomers: aminoacids.""" . 8 type = 'protein' . 9 types = protein . ... protein ) . ... 15 class Protein ( list ): . 16 """User defined protein; list of protein_sequences.""" . ... 19 class Sequence ( base . ... 22 class Alignment ( base . Alignment ): . ... 25 class Block ( Alignment , base . ...

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• allpy: 59acf74bfeb3 allpy/protein.py
• allpy: allpy/protein.py diff
• Исследование ДНК-белковых взаимодействий - учебный сайт Смирновой Виктории

Prediction of cation binding sites using structural water L. A. Uroshlev, V. J. Makeev Vavilov Institute of General Genetics RAS, Engelhardt Institute of Molecular Biology RAS; leoniduroshlev@gmail.com Introduction Bivalent cations are well-known protein cofactors. ... The ion binding pockets are local, have specific structures, and thus can be recognized as structural motifs. ... Contribution of protein atoms of different types and structural water into pseudoenergy of binding for differ ion types. ...

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• Program of MCCMB'05

Project Leader: Pavel P. PHILIPPOV , Dr. of Science (Biolology), Professor of Biochemistry, Head of the Department of Enzymology, A.N.Belozersky Institute of Physico-Chemical Biology, Moscow State University. ... Antoch M.P., Lukjanov K.A., Philippov P.P. (1989) FEBS Lett. ... Identification of rhodopsin kinase as the recoverin intracellular target [Gorodovikova E.N., Philippov P.P (1993) FEBS Lett. ... 1994) FEBS Lett. 349, 187-190; Gorodovikova E.N., Senin I.I., Philippov P.P (1994) FEBS Lett. ...

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• zalesova_dept.htm
• Databases
• Лаборатория регуляции белкового синтеза

PHYLIP . PHYLIP is a package of programs for inferring phylogenies. It includes several algorithms like Heuristic tree search, Branch-and-bound tree search, Interactive tree manipulation, Plotting trees, Converting data, making distances or bootstrap replicates. ... http://evolution.genetics.washington.edu/phylip.html . ... Debian Package: Yes, http://www.pasteur.fr/units/sis/debian/biology-en.html . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - MOLMOL
• Access Control Options
• SAL- Other Scientific Fields - Chemistry, Biology Related - SCORE

... Prot-DNA-Korr is a tool for studying sequence correlations between DNA-binding proteins and their binding sites. The program searches for such pairs of positions in alignments of proteins and their binding sites that demonstrate correlations between amino acid residues and bases. ... One only needs two alignments with the same number of elements: one of proteins and one of their respective binding sites. ...

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• User's guide

... Department of Chemical Enzymology, School of Chemistry, Lomonosov Moscow State University, Moscow, 119899, Russia. ... The mapping of the fragments was done using a model structure of horseradish peroxidase. Five of six structurally similar fragments belong to the distal domain and form a subdomain in plant peroxidases that includes the distal heme-coordinating sequence, LHFHDC (amino acid residues 39-44 in horseradish peroxidase). ...

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... In vitro, the protein S7 of Thermus thermophilus is able to form complexes with both the minimal 16S rRNA fragment and the intercistronic region of the str operon mRNA from E.coli (Kd = 1.4x10-7 M and 1.1x10-7 M respectively). ... The filter binding assay. ... The most striking result of our study is that thermophilic protein S7 binds strongly to the E.coli S12-S7 intercistronic region of str mRNA in vitro, inspite of the lack of the functionally analogous thermophilic extended region. ...

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• http://rnp-group.genebee.msu.su/pdfs/article_vas_bioelectro.pdf

... DevHlp_Security This devhlp allows to open a file for read access in the Init routine of a BASEDEV . ... returned: size of file SYIOpenFile ends Valid at INIT time only. ... This routine uses the corresponding function of the miniFSD , not normal file I/O, thus access is restricted. ... Although the size argument of the data structure implies, I'd recommend to better not read more than 32K at a time. ... DL = 044h This function will return the table of security helper functions for file access. ...

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• SGML Declaration of HTML 4.0