... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Optimization algorithms for DSMC computations on parallel clusters" . Vashchenkov P.V., Kashkovsky A.V., Ivanov M.S. The paper describes some algorithms of dynamic decomposition of computational domains when solving the problems of rarefied gas dynamics by the DSMC method on parallel computing clusters. ... Keywords: DSMC, parallel computations, clusters, algorithms, load balance . PostScript (in Russian) (1.74MB) . PDF (in Russian) (331KB) . PostScript. zip (in Russian) (378KB) . ...

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• "Microarray data analysis with a fuzzy clustering algorithm"
• "An expandable monitoring system for computing clusters"
• "The 3D-computer cluster simulation of forming the large-sized one-piece

Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• About COGs
• Hydrophobic clusters
• HF clusters: algorithm

... The quantum-chemical estimation of the effect of phosphorus atoms on the electron acceptor properties of aluminum- and boron-containing zeolite clusters . ... Zeolite clusters modified with boron are also considered. Electron density redistribution upon the zeolite modification with boron and phosphorus, as well as upon the coordination of probe water and ammonia molecules to the clusters is analyzed. ... Moscow University Chemistry Bulletin . 2010, Vol. ... 5, P. 339 . ...

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• Moscow University Chemistry Bulletin Vol. 50, No. 1, P. 9 (2009)
• Moscow University Chemistry Bulletin Vol. 50, No. 1 (2009)
• Molecular Modeling in Chromatostructural Analysis as a New Approach in GC/MS of

BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

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... Dzwinel W., Yuen D.A., Boryczko K. - Cluster Analysis, Data-Mining, Multi-dimensional Visualization of Earthquakes over Space, Time and Feature Space . ... Название: Cluster Analysis, Data-Mining, Multi-dimensional Visualization of Earthquakes over Space, Time and Feature Space . Авторы: Dzwinel W., Yuen D.A., Boryczko K. Аннотация: . ... Seismic events, quantized in space and time, generate the multi-dimensional feature space of the earthquake parameters. ...

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• Franke M. - An update algorithm for restricted random walk clusters ::
• H. Reiss - Treatment of droplike clusters by means of the classical phase
• Schmid G. - Clusters and Colloids: From Theory to Applications :: Электронная

. Domain architecture . Protein role . Number of proteins . Clusters that contain proteins with the same domain architecture . SseC . Unknown . 1 proteins . 44 73 39 68 128 40

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• Cluster 12
• Cluster 128
• Cluster 13

... 4) Percolation probability: [pic] , where L is linear size of lattice. ... The presence of obstacles in a system leads to: - increase of the critical concentration value; this effect grows with increase of the full area of obstacles and falls with increase of the linear size of ones. - increase of the critical exponent ( value; this effect increase with growth both of linear size of obstacles and of their full area. - increase of the growth rate of ...

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... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Technological Institute for Superhard and Novel Carbon Materials . ... Therefore, in solving the problems will be applied as specialized methods for the study of polyatomic structures - the method of empirical potentials Brenner . ... AREA: Condensed Matter Physics, Theoretical Physics, Physical Chemistry . ... Moscow State Uiversity . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Geophysics | Moscow University Supercomputing Center
• CLEO: USER & ADMIN-FRIENDLY CLUSTER BATCH SYSTEM | Moscow University
• APPLICATIONS: Informatics | Moscow University Supercomputing Center

... Laboratory of Mathematical Methods of Image Processing . ... Image analysis . ... Ringing effect . ... It can be efficiently used as a post-processing method for global image deblurring methods . ... Development of edge width estimation algorithm is important for image enhancement and image quality analysis methods. ... Ringing effect so known as Gibbs phenomenon in mathematical methods of image processing is the annoying effect in images and video appeared as rippling artifact near sharp edges. ...

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... 10ґ100 , . ... cluster ґ ). , .., 2001 .. 75 . ... 76 , 7, 10, 2001 , , 20 ( ), : I(t) = I max exp ґ t ---2 , 2 (1) ) , . ... I(- 45 ) = 3,5 1014 /2, 100 ( , F 5 108 /). ... Z = 3370 R = 25 е t2 = - 30 (t = 0). . ... R = 80 е ( 110 000 ), 100 000 . ... R R' , 78 , 7, 10, 2001 , . ... 200 , 50 е), . 3 1019 - 3. ... 79 E, 180 160 140 120 100 80 60 40 0 2 4 6 8 E 10 r/r0 d E cl d e ----r 2 . ... cl E d = 2 = /2r0 = 180 . ... 104 . ... 1999. ... 108ґ113. ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Shvilkina L.B. , Belega E.D. , Elyutin P.V. , Trubnikov D.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 42, ? ... Lhagva O. , Badamdamdin R. , Strakhova Si , Hehnmedeh L. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 27, ? ... Balashov V.V. , Grum-Grzhimailo A.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 23, ? ... в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 16, ? ...

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• Gubin S.P. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Tokmachev Andrei M. - сотрудник | ИСТИНА - Интеллектуальная Система
• Sergeev-Cherenkov A.N. - сотрудник | ИСТИНА - Интеллектуальная Система

Quantitative Structural Model for Prediction and Analysis of R-loop Forming Sequences in the Genomes Piroon Jenjaroenpun Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg Thidathip Wongsurawat ... -star.edu.sg Vladimir A. Kuznetsov Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg INTRODUCTION The R-loop is a three-stranded nucleic acid structure that is co-transcriptionally formed RNA- ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/129.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/32.pdf

... The main interest of researchers was focused on TiO2:Co and TiO2:V thin films, that reveal an essential difference in their behavior: TiO2:Co films demonstrate either strong magnetization, MO response or AHE independently on presence or absence of magnetic Co clusters inside the films. ... It has been found that: thin films TiO2:Co(0.5%, 1.3% and 5%) have either magnetization or MO signal of Transversal Kerr effect with the absence of magnetic clusters. ...

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... There are two methods of describing plant associations of the lake-shore: visual and analytical. ... We analyzed each lake separately with help of cluster analysis (Manchattan distance, Ward method). ... Besides, cluster analysis only for common plant species was performed. ... All common species on this lake form one multitudinous cluster (fig. 5), except for Comarum palustre and Equisetum fluviatile (the same group of species reveled by cluster analysis for common species from other lakes). ...

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This is very short lesson. ... The reason of this is that dynamic load balancing allows the PC GAMESS/Firefly to use coarser-grained parallel algorithms with much less work duplicated across nodes and typically with much more efficient, optimized memory access patterns. ... To activate dynamic load balancing, just add the following line to your PC GAMESS/Firefly input: . ... Details on the MP2 energy code and p2p interface implementation in the PC GAMESS/Firefly. ...

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• PC GAMESS v. 7.1.1 benchmarks and scalability on Infiniband Opteron Windows CCS

... This course is dedicated to the main principles, methods and techniques of parallel programming oriented at resolution of resource-intensive tasks physically and in non-linear optics in particular. The course offers profound description of popular techniques of parallel programming such as OpenMP and MPI. ... Rapid growth of productivity of the modern computing systems is achieved by using parallel processors and multicore systems. ... Antonov, A.S. Parallel Programming Using MPI. ...

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Teaching courses . for student of the Department of Astrophysics and Stellar Astronomy . ... Geophysics and physics of the planets (Kurt, Panteleev) . ... Close Binary Stars . ... Solar Physics . ... This is introductory course for students of the third year of education which are familiar with elementary astronomy and general physics. ... The one-year course includes theory of radiation transfer, theory of internal stellar structure with account of binary systems with compact comapnions. ...

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• The Frequency-Frequency (FF) Plane
• Springer LINK:A&A-EE: Table of Contents Volume 333 Number 3 (1998)
• Springer LINK:A&A-EE: Table of Contents Volume 320 Number 3 (1997)

... Master . ... Participants . ... Zel'dovich asteroid . ... YaB-100 conferences . ... Gnedin Yu.N. Investigation of vacuum polarization in strong magnetic fields of neutron stars: Zel'dovich ideological impetus . ... Doroshkevich A.G. Beyond the limits of the LambdaCDM cosmology . ... Illarionov A.F. Title is discussed . ... Imshennik V.S. Title is discussed . ... Polnarev A.G. Polarization of CMB generated by Cosmological Gravitational Waves . ... Ruzmaikin A.A. A game of chance . ...

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