... utils/extract_pfam.py . ... 1.1 --- a/utils/extract_ pfam .py Fri Jul 08 12:09:39 2011 +0400 1.2 +++ b/utils/extract_ pfam .py Fri Jul 08 14:47:23 2011 +0400 1.3 @@ -1,53 +1,104 @@ 1.4 #!/usr/bin/python 1.5 - import optparse 1.6 import gzip 1.7 - import itertools 1.8 import inspect 1.9 + import os 1.10 + import re 1.11 from Bio import AlignIO, Align 1.12 +from allpy ...

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• allpy: a9d4a06ed103 allpy/markups.py
• allpy: f780b7ba75c6 allpy/markups.py
• allpy: 6d6e65ba3b23 allpy/markups.py

... Class . ... public class Schema . ... This is a set of ProtoVariable, the DimensionSet which is the union of the Dimensions used, and any global Attributes. ... contains (java.lang.String name) . ... Returns the set of attributes associated with this, also know as the "global" attributes. ... a new Array containing the elements of this set. public ProtoVariable get (java.lang.String name) . ... If a different ProtoVariable with the same name, was in the set, it is returned, otherwise null is...

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• : Class Attribute
• : Interface AttributeSet
• : Class ProtoVariable

... PostgreSQL function names will be changed in 4.2.0 release to confirm current coding standard. ... Please use connection string for pg_connect() and pg_pconnect(). ... To use the large object (lo) interface, it is required to enclose large object functions within a transaction block. ... pg_connect -- Open a PostgreSQL connection . pg_dbname -- Get the database name . ... pg_host -- Returns the host name associated with the connection . ... pg_lo_tell -- Returns current position of large object . ...

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• count
• bcsub
• bzerror

... CREATE FUNCTION parse( parser , document TEXT ) RETURNS SETOF tokenout . Parses the given document and returns a series of records, one for each token produced by parsing. Each record includes a tokid giving its type and a token which gives its content. postgres=# select * from parse('default','123 - a number'); tokid | ... CREATE FUNCTION token_type( parser ) RETURNS SETOF tokentype . ... Latin word 2 | ... Non-latin word 3 | ... Non-latin part of hyphenated word 11 | ... Hyphenated word 16 | ...

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• Zen: Gin
• Open Source Convention
• FTS Dictionary Example

... Line: 1 to 1 . ... Results in table Regular example: %SEARCH{"wiki" web="Main" scope="topic"}% . ... Formatted example: %SEARCH{"FAQ" scope="topic" nosearch="on" nototal="on" header="| ... The name of a topic located in the current web, i.e. %INCLUDE{"WebNotify"}% . ... A topic in another web, i.e. %INCLUDE{"TWiki.SiteMap"}% . ... Inline search, shows a search result embedded in a topic. ... Sort the results of search by the topic names, last modified time, last editor, or named field of TWikiForms ...

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• %TOPICTITLE% (3 vs. 4) - TWiki
• %TOPICTITLE% (1 vs. 2) - TWiki
• VarSEARCH - TWiki - TWiki - (printable)

... SYSTEM CALL : semop (); PROTOTYPE: int semop ( int semid, struct sembuf *sops, unsigned nsops); RETURNS: 0 on success (all operations performed) -1 on error: errno = E2BIG (nsops greater than max number ... EACCESS (permission denied) EAGAIN (IPC_NOWAIT asserted, operation could not go through) EFAULT (invalid address pointed to by sops argument ) EIDRM ( semaphore set was removed) EINTR (Signal received while sleeping) EINVAL ( ... The sops argument points to an array of type sembuf . ...

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• SYSTEM CALL: msgsnd()
• How to Dial a Number-- the dial File
• SYSTEM CALL: semctl()

... General (Graph) Constructor . ... MPI_GRAPH_CREATE(comm_old, nnodes, index, edges, reorder, comm_graph) . ... int MPI_Graph_create(MPI_Comm comm_old, int nnodes, int *index, int *edges, int reorder, MPI_Comm *comm_graph) . MPI_GRAPH_CREATE(COMM_OLD, NNODES, INDEX, EDGES, REORDER, COMM_GRAPH, IERROR) . INTEGER COMM_OLD, NNODES, INDEX(*), EDGES(*), COMM_GRAPH, IERROR . ... The three parameters nnodes, index and edges define the graph structure. nnodes is the number of nodes of the graph. ...

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• MPI_Type_struct | PARALLEL.RU - Информационно-аналитический центр по
• Topology inquiry functions | PARALLEL.RU - Информационно-аналитический центр по
• MPI_Reduce_scatter | PARALLEL.RU - Информационно-аналитический центр по

... WEEKNUM (date, method) . WEEKNUM returns the week number of @date according to the given @method. @method defaults to 1. For method=1, week starts on Sunday, and days before first Sunday are in week 0. For method=2, week starts on Monday, and days before first Monday are in week 0. For method=150, the ISO 8601 week number is returned. Returns #NUM! if date or method is invalid. This function is Excel compatible, except that Excel does not support ISO 8601 week numbers. ...

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• INDEX
• COUPDAYSNC
• COUPDAYBS

Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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• DVM debugger. Detailed design. Part 3
• DVM debugger. Detailed design. Part 4
• Performance Analyzer. Detailed design

... DevHlp_Security This devhlp allows to open a file for read access in the Init routine of a BASEDEV . ... returned: size of file SYIOpenFile ends Valid at INIT time only. ... This routine uses the corresponding function of the miniFSD , not normal file I/O, thus access is restricted. ... Although the size argument of the data structure implies, I'd recommend to better not read more than 32K at a time. ... DL = 044h This function will return the table of security helper functions for file access. ...

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• Explanation of certain terms
• Appendix D: The grammar of CSS2
• Search by subdirectory on archive XFree86/OS2

The QBitArray class provides an array of bits. ... QBitArray&  operator=  ( const QBitArray & )  . ... A QBitArray is a special byte array that can access individual bits and perform bit-operations (AND, OR, XOR and NOT) on entire arrays or bits. ... Constructs a shallow copy of a. Constructs a bit array of size bits. ... Will resize the bit array to size bits if size is nonnegative. ... Resizes the bit array to size bits. ... See also: size (). ... Returns the size (number of bits) of the bit array. ...

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• Qt Toolkit - QTime Class
• Qt Toolkit - QByteArray Class
• Qt Toolkit - QIntCache Class

О лаборатории . ... Лаборатория теоретической биофизики . ... This Python module parses Gaussian cube files, produced by quite a few QM software packages, and makes volume data available as numpy array as well as some associated properties. ... Нет комментариев " Gaussian Cube files loader " . ... 2011 ERG Research Group . ...

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• Constructing discrete Laplacian via sparse matrix ERG Research Group:

double sqme_(int nsub,double * momenta, int * err) returns the numerical value of squared matrix element after summation over out-particle polarizations and averaging over in-particle polarizations. ... The Lorentz component of the particle number N corresponds to momenta[4*N+i] , . ... We assume that the zero Lorentz components of momenta are positive and the sum of incoming particle momenta is equal to the sum of outgoing particle momenta. ...

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• Fortran case
• Fortran output files
• Parameter section

You are here: Foswiki > System Web > ReferenceManual > DeveloperDocumentationCategory > PerlDoc (19 Apr 2011, ProjectContributor ) E dit A ttach . ... internal package Foswiki::Infix::Parser . ... A simple stack-based parser that parses infix expressions with nonary, unary and binary operators specified using an operator table. ... Creates a new infix parser. ... The tokeniser matches tokens in the following order: operators, quotes (" and '), numbers, words, brackets. ... name - operator string . ...

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• TopicListPlugin < System < Foswiki

Электронная библиотека Попечительского совета . ... Cohen L.W., Ehrlich G. - The Structure of the Real Number System . ... Название: The Structure of the Real Number System . Авторы: Cohen L.W., Ehrlich G. Аннотация: . ... When the student begins graduate study he finds that he is expected to be familiar with the structure of the real number HyHtem. ... Addition of real numbers 82 . ... Multiplication of real numbers 82 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Bradford R. - Some results on the defect of algebraic numbers :: Электронная
• Zimmer H.G. - Computational Problems, Methods, and Results in Algebraic Number
• Burris S. - Number theoretic density and logical limit laws :: Электронная

You are here: Foswiki > System Web > TopicListPlugin (revision 1) E dit A ttach . Gives you the possibility to generate a list of topics by macro or rest handler. ... Yet it is not able to use a rest function to recieve a list of all topics of a web, picking them up e.g. by the starting character "S" or similar. ... which web should be used to get the topic-list. ... List maximum 20 topics of this web starting with "S", decreasing order: %GETTOPICLIST{pattern="^S.*$" max="40" order=">"}% . ...

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• (backlinks in all Webs) VarLANG < System < Foswiki
• (backlinks in all Webs) VarREVTITLE < System < Foswiki
• (backlinks in System Web) VarREVTITLE < System < Foswiki

... 7.6 . ...

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• RNA Kinetics: Result explanation

There are some variables which are set internally by the shell and which are available to the user: Name Description . ... 0 the name of the command currently being executed. $# the number of positional arguments given to this invocation of the shell. $? the exit status of the last command executed is given as a decimal string. ... For example '1 2' 3 becomes "1 2 3" . is identical to the arguments received by the shell, the resulting list of words completely match what was given to the shell. ...

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• Running processes as background jobs
• Ordered Lists
• HTML Math

... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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• Index of /static/AltDocs_informatika2/Book2/ch_10_prolog/11_number_task
• HelpOnMoinWikiSyntax - UNИX

... The numbers of three types of compact binaries containing accreting NSs and BHs, which are most interesting from the point of view of their observational appearances, have been calculated as a function of time: i) X-ray transient source containing a NS in an eccentric orbit around a main sequence Be-star (the observed prototype: A0535+26), ii) BH The evolution of the selected types of X-ray binaries during the first 10 million years after the starburst onset is presented in Fig. ...

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• Results
• ADS Abstract Service Results
• Parameters of the starburst