SVETKA, a program for analysis of different alignments . Back to the help page . ... Such a feature can look like " Leucine in the position 362 of the alignment of the entire family " and can, in many cases, be a "decision rule" to distinguish sequences from two sides of a tree branch. ... Comparing the alignment with an input tree (the tree may be entered by the user or reconstructed with the WPGMA algorithm), the program detects supporting positions of the alignment for every branch the tree. ...

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• SDP home page
• Inquiry information || Schemes of phylogenetic trees
• ETS_all_contacts alignment

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• http://kodomo.cmm.msu.su/FBB/year_03/doc/matrix.doc

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... SDPfox - the software package for the prediction of functional specificity groups and amino acid residues that determine the specificity using MPA. ... Amino acid residues that determine differences in protein functional specificity and account for correct recognition of interaction partners, are usually thought to correspond to those positions of a protein multiple alignment, where the distribution of amino acids is closely associated with grouping of proteins by specificity. ...

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• SDPsite - Algorithm Format requirements
• SDPpred

Anchoring patterns and point mutations in pairwise alignments using AlignMe X-ray crystal structures have revealed that numerous membrane proteins, such as GPCRs or some secondary transporters, despite the lack of any detectable sequence similarity between them, still share very similar 3D structures. ... The novel feature allows the user to define any number of anchors with varying strength for improving the quality of pairwise alignments in challenging cases lacking notable sequence similarity. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/167.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/214.pdf

... 2001 June 5 . Asteroid Eros Reconstructed . Credit : NEAR Project , NLR , JHUAPL , Goddard SVS , NASA . ... NEAR allowed scientists to discover that Eros is a single solid body, that its composition is nearly uniform, and that it formed during the early years of our Solar System . ... On 2001 February 12, the NEAR mission drew to a dramatic close as it was crash landed onto the asteroid's surface , surviving well enough to return an analysis of the composition of the surface regolith . ...

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• APOD: 2009 June 7 - Asteroid Eros Reconstructed
• APOD: August 20, 1998 - SOHO Composite: Coronal Mass Ejection
• APOD: 2005 January 7 - S is for Venus

О лаборатории . ... Лаборатория теоретической биофизики . ... ERG group members work with different types of molecules and consequently added new atomtypes into classical OPLS-AA distributed with GROMACS. Now the ERG patch of OPLS-AA force field is published at bitbucket as a repository. ... Нет комментариев " OPLS-AA patch for different types of molecules " . ... OPLS-AA patch for different types of molecules . ... OPLS-AA? in All-atom automatic OPLS-AA topology? ... 2016 ERG Research Group . ...

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• comcon1 ERG Research Group: Лаборатория теоретической биофизики
• OPLS ERG Research Group: Лаборатория теоретической биофизики
• topology ERG Research Group: Лаборатория теоретической биофизики

... Gas defects, gas content, gas release and gas diffusion processes in glassy and crystalline silicas have been studied by the method of kinetic thermodesorption mass spectrometry. ... Gas transport processes in glassy and crystalline silicas are different within two temperature ranges. ... The model provides reasonable interpretation of many peculiarities of water diffusion in vitreous and crystalline silicas, including concentration dependence of water diffusion coefficient. ...

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• Peculiarities of Diffusive Transport of Water and Other Gases in Glassy and
• Moscow University Chemistry Bulletin Vol. 49, No. 4, P. 274 (2008)
• Moscow University Chemistry Bulletin Vol. 56, No. 2, P. 91 (2015)

... key words: [ melt inclusions, experiment, diffusion, boundary layer effect ] . ... It is well known that the melt composition at the surface of growing crystal is very different from the bulk melt composition owing to the boundary effects of redistribution of a substance between the melt and the crystal. ... Estimation of an influence of the boundary effect on melt inclusion composition . ... The larger inclusion the weaker its influence on the boundary layer. ...

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• Trusov Sergey's homepage The influence of boundary layer effects on the melt

IGLA-3D is a modular method for construction of pairwise 3D alignments (superpositions) of protein structures. ... the first module (IS) constructs an initial superposition of two protein structures or an initial core, the second module (AC) constructs alignment core given proteins superposition, the third module (FM) finds a motion (shift and rotation) that optimally superimposes the alignment core, the forth module (SM) evaluates the similarity of proteins given a 3D alignment of these proteins. ...

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• AliComp - GeneBee Alignment Comparison Help
• AliGraf - GeneBee Graphical Alignment Help
• GeneBee BLAST 2.2.22+ Services Help

Next: Routing Messages Up: Getting smail Up and Previous: Miscellaneous config Options . smail splits up mail delivery into three different tasks, the router, director, and transport module. The router module resolves all remote addresses, determining to which host the message should be sent to next, and which transport must be used. ... By far the most common case will be delivery to a mailbox, but messages may also be piped into a command, or appended to some arbitrary file. ...

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• Introduction
• Different Streaks of Development
• How is Mail Delivered?

... We consider now change-points in different components of the frequency spectrum of typical EEG signal. ... Only few change-points in power are found in the initial EEG (unless a prominent alpha rhythm is present). ... Change-points in different frequency components of the EEG . ... Change-points in different types of the EEG alpha activity without substantial gradual changes . ... As can be seen from Fig. 7.3, the program reliably detected the change-points despite of such variety of signal patterns...

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• Change-points at different levels of the hierarchy of EEG segmental...

Sorex araneus . Epigenetic variation of the common shrew, Sorex araneus , in different habitats . ... Epigenetic variation of the common shrew, Sorex araneus , was studied in three habitats (floodplain forest, wet sedge bog and dry meadow) at Bia?owie?a, north-eastern Poland. ... Chromosome and allozyme variation of the common shrew, Sorex araneus, in different habitats // Hereditas. ... Morphometric variation of the common shrew, Sorex araneus, in different habitats // Mammalia. ...

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• Biochemical analysis of the metabolism of small rodents living in different

... Kingdon, Penning and Paul ion traps invented correspondingly in 1923, 1936 and 1956 have played essential role in 20th century physics- test of the validity of quantum electrodynamics, tests of symmetry properties of fundamental laws-particle-antiparticle (electron-positron), the electric dipole moment of the neutron, ion spectroscopy, hyromagnetic ratio, comparison of masses m(p+/m(e-) m(CO+)/m(N2+) frequency and time standards, dusty plasma and so on. ... 2007 Biophysics dep., ...

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... Heterogeneous networks and the ch_p4 device . ... mpirun -arch sun4 -np 3 -arch IRIX -np 3 program.%a While the ch_p4 device supports communication between workstations in heterogeneous TCP/IP networks, it does not allow the coupling of multiple multicomputers. ... This is only a benefit with the ch_p4 device. ... Up: Heterogeneous networks and the ch_p4 device Next: Heterogeneous networks of multicomputers and the ch_nexus device Previous: Heterogeneous networks and the ch_p4 device . ... Центры . ...

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• Special features of different systems | PARALLEL.RU -
• Derived datatypes | PARALLEL.RU - Информационно-аналитический центр по
• Programs fail after starting | PARALLEL.RU - Информационно-аналитический центр

Next: Acknowledgements Up: World Wide Web version Previous: Page contents . ... Part of the table and a cartoon figure of the track calculated for the default set of the initial parameters are shown in Fig. 1 and 2. In the future, we intend to made available calculations of a large number of binary systems assuming different intial distributions, chemical composition, etc., to construct a "Galaxy at will", as well as various interface facilities. ... Fri Jun 21 19:17:07 MSD 1996 ...

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• E-P transitions for different orbits
• Gravitational waves from supernova explosions
• Introduction

Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

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• http://nuclphys.sinp.msu.ru/conf/lpp14/240809/Petrushanko.pdf

... Twenty-four-hour observations on the behavior of white water-lily ( Nymphaea candida Presl.) flowers were conducted. The observations were made during different photoperiods in the Middle Russia (natural photoperiod, light flash in the dark daytime, absence of light daytime) and in the Northern Karelia (polar day). ... Movements of water-lily flowers appear to serve for pollination optimization. ...

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• The variability of different Drosera
• The behavior of Nymphaea flowers
• International Journal on Algae Vol.1., No.4. 1999

... There are different techniques available that may be used to achieve an effect of focusing of acoustic energy. ... Although such type of array is known, there are comparatively little available experimental data concerning the radiation of finite amplitude wave by it. The aim of the paper is to present results of examination, both experimental and numerical, of the pressure field of the arrays composed of axisymmetric areas of different structure radiating the finite amplitude wave. ...

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