... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Site Cluster

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Hydrophobic clusters
• ETS_water_bridges
• Inquiry information || Distances

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Phylogenetic tree
• OUTPUT

... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Structure
• SAI OCL Catalog Publications
• SAI OCL Catalog Description

BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

Еще в разделе: (Показать все результаты (>5137) - kodomo.cmm.msu.ru/ )

... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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• Geometrical core

... Chemistry of Coordination Compounds . ... Inorganic Synthesis . ... CLUSTERS AND EXTENDED METAL-METAL BOND SYSTEMS IN INORGANIC COMPOUNDS . ... Cluster compounds, structure & bonding, quantum chemistry . ... Inorganic synthesis, bismuth clusters, metal subhalides . ... inorganic synthesis, clusters, mixed chalcogenides . ... Design, synthesis and investigations of inorganic compounds featuring extended systems of homo- and heterometallic bonds of varying (1D, 2D) dimensionality. ... Kuznetsov . ...

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... Shapley H. - Studies of Magnitudes in Star Clusters II. On the Sequence of Spectral Types in Stellar Evolution . ... Название: Studies of Magnitudes in Star Clusters II. ... Автор: Shapley H. Язык: . ...

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• Shapley H. - Studies of Magnitudes in Star Clusters VIII. A Summary of Results
• Alonso J.A. - Structure and Properties of Atomic Nanoclusters :: Электронная
• Franke M. - An update algorithm for restricted random walk clusters ::

Quantitative Structural Model for Prediction and Analysis of R-loop Forming Sequences in the Genomes Piroon Jenjaroenpun Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg Thidathip Wongsurawat ... -star.edu.sg Vladimir A. Kuznetsov Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg INTRODUCTION The R-loop is a three-stranded nucleic acid structure that is co-transcriptionally formed RNA- ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/129.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf

. ћ . Наши юбиляры . љљљљљљљ љљљљљљљљљ . ћ Сотрудники отдела . ћ Наша научная работа . ћ Семинар по Звездной астрономии . ћ Конференции . ћ Общий Каталог Переменных Звезд . ћ Каталог рассеянных скоплений . ћ Московская школа звездной астрономии . ћ Юбилеи сотрудников . ћ Избранные публикации . ћ Педагогическая и популяризаторская деятельность . ћ Наши интернет-ресурсы и другие полезные ресурсы . ћ Ссылки на каталоги и базы данных . ћ Фотогалерея . Присылайте Ваши вопросы и комментарии Ольге Дурлевич

Еще в разделе: (Показать все результаты (>3595) - www.sai.msu.su/ )

• APOD Index - Stars: Globular Clusters
• SAL- Other Scientific Fields - Chemistry, Biology Related - Protein Structure
• APOD Index - Galaxies: Clusters of Galaxies

... Optimization algorithms for DSMC computations on parallel clusters" . Vashchenkov P.V., Kashkovsky A.V., Ivanov M.S. The paper describes some algorithms of dynamic decomposition of computational domains when solving the problems of rarefied gas dynamics by the DSMC method on parallel computing clusters. ... Keywords: DSMC, parallel computations, clusters, algorithms, load balance . PostScript (in Russian) (1.74MB) . PDF (in Russian) (331KB) . PostScript. zip (in Russian) (378KB) . ...

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• "Evaluation of clusters with AMD Barcelona and Shanghai CPUs and Infiniband DDR
• "Three-dimensional LBE simulations on hybrid GPU-clusters for the decay of a
• "Implementation of the lattice Boltzmann method on GPU clusters"

... Shvilkina L.B. , Belega E.D. , Elyutin P.V. , Trubnikov D.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 42, ? ... Lhagva O. , Badamdamdin R. , Strakhova Si , Hehnmedeh L. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 27, ? ... Balashov V.V. , Grum-Grzhimailo A.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 23, ? ... в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 16, ? ...

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• Journal of Molecular Structure - журнал | ИСТИНА - Интеллектуальная Система
• Mamaev V.M. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• RYBINSKAYA MI - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

Alexey Rastorguev's links to DataBases and Catalogs: . ... Open Clusters and Galactic Structure База данных и каталог рассеянных скоплений Галактики . ... USNO: Astronomical Applications Каталоги и базы данных - проекты Морской Обсерватории США . ... HST Science Data Archive Архив данных HST . CFHT Data Archive Архив данных CFHT . ... USNO Recommended Star Catalogs (Zacharias N. et al.) ... USNO Star Catalogs Каталоги USNO . ... USNO-B1.0 Catalog Астрометрический каталог USNO-B1.0 . ...

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• Yuri Nicolaevich Efremov - My Home Page

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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... Difference between workstation clusters and MPPs . Up: Special features of different systems Next: Checking your machines list Previous: Special features of different systems . ... In contrast, workstation clusters require that each process in a parallel job be started individually, though programs to help start these processes exist (see Using the secure server below). ... Using heterogeneous clusters is discussed below.) ... Центры . ...

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• Special features of different systems | PARALLEL.RU -

... NGC 1818: A Young Globular Cluster . ... HST , NASA Explanation: Globular clusters once ruled the Milky Way . Back in the old days , back when our Galaxy first formed, perhaps thousands of globular clusters roamed our Galaxy. ... There are few, if any, young globular clusters in our Milky Way Galaxy because conditions are not ripe for more to form. ... Pictured above is a "young" globular cluster residing there: NGC 1818 . ... Publications with keywords: LMC - NGC 1818 - globular cluster . ...

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• Астронет > NGC 1818: A Young Globular Cluster

... The quantum-chemical estimation of the effect of phosphorus atoms on the electron acceptor properties of aluminum- and boron-containing zeolite clusters . ... Zeolite clusters modified with boron are also considered. Electron density redistribution upon the zeolite modification with boron and phosphorus, as well as upon the coordination of probe water and ammonia molecules to the clusters is analyzed. ... Moscow University Chemistry Bulletin . 2010, Vol. ... 5, P. 339 . ...

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• Formation of large carbon clusters during laser ablation of foam graphite
• The effect of giant clusters photodissociation and photoionisation on dynamics
• Moscow University Chemistry Bulletin Vol. 50, No. 1 (2009)

... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Moscow State Uiversity . ... STRATEGY: numerical methods for hydrodynamics in porous media . ... AREA: Geophysics, Mechanics . ... AREA: Geophysics, Geology . ... STRATEGY: Numerical simulation of seismic wave propagation in models with complex fluid-filled structures using grid-based multi-scale methods (finite difference, finite elements). ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• CLEO: USER & ADMIN-FRIENDLY CLUSTER BATCH SYSTEM | Moscow University
• APPLICATIONS: Theoretical Physics | Moscow University Supercomputing Center
• APPLICATIONS: Mathematics | Moscow University Supercomputing Center

Beck R., Frick P., Stepanov R., Sokoloff D. Recognizing magnetic structures by present and future radiotelescopes with RM Synthesis, eprint arXiv:1204.5694, 2012. We investigate whether the method of wavelet-based Faraday rotation measure (RM) Synthesis can help us to identify structures of regular and turbulent magnetic fields in extended magnetized objects, such as galaxies and galaxy clusters. ... We present observational tests to recognize magnetic field structures. ...

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• Beck R., Frick P., Stepanov, R., Sokoloff D. Recognizing magnetic structures by
• Mikushin, D.N., and V.M. Stepanenko. The implementation of regional atmospheric