A survey of algorithms for constructing a Delaunay triangulation" . A.V. Skvortsov . A large number of widely used algorithms for constructing a Delaunay triangulation are considered. ... Several procedures for checking the Delaunay condition and for the triangulation merging are described. PostScript (in Russian) (1734KB) . PDF (in Russian) (585йB) . PostScript. zip (in Russian) (434йB) . PDF. zip (in Russian) (372йB) . A.V. Skvortsov e-mail: skv@csd.tsu.ru ...

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• A variable structure algorithm using the (3,2)-scheme and the Fehlberg method
• "Wall boundary conditions and mesh dependency of the solution for the

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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... The influence of the crystallization conditions and postcrystallization processes on the real structure of PbTe-based semiconductor solid solutions was studied. ... The postcrystallization processes were studied on PbTe crystals doped with Cr, Co, Ni, and In, which were grown at different supersaturations and had different real structure. ... The real structure of samples with low impurity concentration and dislocation density of (1-2)*10^4$~cm$^{-2}$ exhibits minimal changes during the annealing. ...

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• PC Crystal Chemistry Analysis of Organic Crystal Structures

Hide Zen home . ... Index . ... Do we really need them for database indexing ? ... We need simple numbering scheme, so that for any given point we could easily calculate the number of "pixel", this is what HealPix provides and lacks HTM. ... During Rtree queries the number of index blocks read is several times greater than during Q3C queries. ... But in Q3C scheme, as we showed before, the circle is segmented, so we extract from the database only a few percents more data than occur in the circle. ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - Protein Structure
• SAL- Other Scientific Fields - Chemistry, Biology Related - Evalign
• SAL- Other Scientific Fields - Artificial Intelligence - ALE

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank
• Bioinformatics portal, Moscow State University
• GeneBee

Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods Aleksandra Vasileva3, Michael Kiening1, Dmitrij Frishman1, 1 2,3 Department of Bioinformatics, Technische UniversitДt MЭnchen ... 195251 , Russia, aleksandra.vasileva.spbpu@gmail.com mRNA molecules contain three main domains ­ 5'UTR (untranslated region), CDS ( coding region), and 3'UTR ... One of the options in this case is to compute the distance between two RNA structures. ... Fig. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf

Электронная библиотека Попечительского совета . ... Panasenko G.P. - Multiscale Modelling for Structures and Composites . ... Название: Multiscale Modelling for Structures and Composites . Автор: Panasenko G.P. Аннотация: . Rod structures are widely used in modern engineering. ... Moreover, a lot of modern structures are made of composite materials and therefore the material of the rods is not homogeneous. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Ruelle D. - Thermodynamic Formalism: The Mathematical Structure of Equilibrium
• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека
• Drmac Z. (ed.), Tutek Z. (ed.), Marusic M. (ed.) - Proceedings of the

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Align tool for DNA-protein complexes
• StructAlign help

... Online Services | ... Construct your query and output by sequental openings of needed fields. One output field must be selected (not be blank) at least. ... Query parameters: . Select for output . ... Energy (keV) . ... Y D H M S MS US NS PS FS AS EV KEV MEV or Stable . ... Energy of the ?-ray (keV) . ... Energy parameters of nucleus (B , Alpha energy, N, P separation energy) . ... Neutron separation energy (keV) . Proton separation energy (keV) . ... Excited energy(keV) . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• S publications
• ETS_all_contacts alignment
• ETS_3D_conservation

... Classification of the engineering geological Earth's structures and their characteristic (Project manager – Prof. Trofimov V.T.; investigator – Ass. ... Artificial soils as a result of technogenesis (Project manager - Prof. Trofimov V.T.; investigator - Ass. ... Tgheoretical problems of evolution of engineering geological Earth's conditions at the epoch of technogenesis (Project manager - Prof. Trofimov V.T.; investigator – Senior Research Worker Kyrinov M.B.); . ... Project manager . ... 1998-2000 ...

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• Department of Lithology and Marine Geology - Laboratories
• Trofimov Victor Titovich

... Control Structures . ... Often you'd want to execute a statement if a certain condition is met, and a different statement if the condition is not met. This is what else is for. else extends an if statement to execute a statement in case the expression in the if statement evaluates to FALSE . ... The else statement is only executed if the if expression evaluated to FALSE , and if there were any elseif expressions - only if they evaluated to FALSE as well (see elseif ). ... elseif ...

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• include
• Control Structures
• switch

The %IF% construct gives TWiki the power to include content in topics based on the value of simple expressions. IF{"CONDITION" then="THEN" else="ELSE"}% . ... context . True if the current context is set (see below) . ... Check access permissions You %IF{"'%TOPIC%' allows 'change'" then="can" else="cannot"}% change this topic. ... in attach script (see TWikiScripts ) . ... in changes script (see TWikiScripts ) . ... in rdiff script (see TWikiScripts ) . ... in edit script (see TWikiScripts ) . ...

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• IfStatements - TWiki - TWiki

... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Universitetsky 13, Moscow 119899, Russia, shev@sai.msu.ru . ... 1.Sternberg State Astronomical Institute, 119899, Moscow, Russia. shev@sai.msu.ru . ... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Moscow 119992, Russia, shev@sai.msu.ru . ... 119992 Moscow, Russia; . ... 2Sternberg Astronomical Institute, Moscow University, Moscow, 119992, Russia, . ... Moscow, 119992, Russia shev@sai.msu.ru . ...

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... The main problem is increasing the recognition rate of some recognition engines, working in some restricted domains, such as telephone time-table question-answer systems and so on. ... Our algorithms allow user to get recognition variants, which are right sentences in some formal language. ... We suppose that BRE can produce a set of recognition variants in the form of the "complex chain". ... Length of complex chain is the number of vertexes in its graph. ... const*n^2 . ...

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Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

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... real.msf - выравнивание пространственных структур. Отмечено и цветом, и в строке Align, где выравниваются только два белка, где три, а где все четыре. script.src - скрипт для выделения области (не всей данной, потому что разобрать на общей все петли - тяжело) и раскрашивания разных цепей в разные цвета . ... A YGRWE- C YGQWE- D -GFWLE E GASFK- . ... 1 50 A AEIYNKDGNK LDVYGKVKAM HYMSDN.. ... 51 65 A ETQINDQLTG YGRWE C ETQINDQLTG YGQWE D TEDLGGGLKA GFWLE E SGTTDSGLEF GASFK Align ********** ***** . ...

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• Conservative Amino Acid Residues

... Quaternary structure of human small heat shock protein HSPB6 (Hsp20) in crowded media modeled by trimethylamine N-oxide (TMAO): Effect of protein phosphorylation. ... Effect of trimethylamine N-oxide (TMAO), well-known osmolyte, widely used to imitate crowded intracellular conditions, on the quaternary structure of recombinant human small heat shock protein HspB6 (Hsp20) was analyzed by means of size-exclusion chromatography, chemical crosslinking and analytical ultracentrifugation. ...

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• Molecular structure and dynamics of the dimeric human small heat shock protein
• Structure and properties of chimeric small heat shock proteins containing
• Three-dimensional structure of alpha-crystallin domain dimers of human small