... The factors that play the key role in complex formation are as follows: the rate of protein diffusion to the docking site; long-range electrostatic interactions between protein surfaces, geometric and chemical complementarity of binding areas; molecular mobility at the protein­protein interphase, hydrogen bonds, Van der Waals interactions, hydrophobic interactions, and salt bridges. ... Three-dimensional protein molecules are constructed on the basis of data extracted from the Protein Data Bank. ...

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... The first-order intermolecular perturbation theory developed in the frame of diatomics-in-molecule approach is used to calculate the potential energy surfaces of the Ar.. Cl2 complex in the states which correlate with the X0g+ and B0u+ states of Cl2 fragment. ... Laboratory of Molecular Structure and Quantum Mechanics ...

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• Agostic versus Hypervalent Si-H Interactions in Half-sandwich Complexes of Nb
• Silicas modified by polyelectrolyte complexes for the ion chromatography of
• Polymer-surfactant complexes in aqueous solution

... NADH/NAD+ interaction with NADH: ubiquinone oxidoreductase (complex I). ... 2008 Jul-Aug;1777(7-8):729-34. doi: 10.1016/j.bbabio.2008.04.014. Epub 2008 Apr 18. ... The quantitative data on the binding affinity of NADH, NAD(+), and their analogues for complex I as emerged from the steady-state kinetics data and from more direct studies under equilibrium conditions are summarized and discussed. ...

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• Heterooligomeric complexes formed by human small heat shock proteins HspB1
• Heterooligomeric complexes of human small heat shock proteins.
• Effect of phosphorylation on interaction of human tau protein with 14-3-3zeta.

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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• NPIDB: List of complexes
• NPIDB: Help
• NPIDB: 5DPK structure

Home :: Personnel :: Kramarenko, Elena Yul'evna :: List of Publications . A.R. Khokhlov, E.Yu. ... Collapse of Polyelectrolyte Networks Induced by Their Interaction with Oppositely Charged Surfactants. Macromolecules , 1992, vol. 25, p. 4779. ... E.Yu. Kramarenko, R.G. Winkler, P.G. Khalatur, A.R. Khokhlov, P. Reineker . ... Kramarenko, A.R. Khokhlov, K.Yoshikawa . ... Kramarenko, I.I. Potemkin, A.R. Khokhlov, R.G. Winkler, P. Reineker . ... Kramarenko, A.R. Khokhlov, S.E. Kudaibergenov . ...

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• Laboratory of nonlinear, non-equilibrium and complex systems
• Selected publications of Starodubtsev, Sergey Gennadievich
• P.N.S.P.M. Lab. - Collaboration

Computation of contribution from the cavity effect to protein-ligand binding free energy" . Grigoriev F.V., Jabin S.N., Romanov A.N., Sulimov V.B. Some results of the study of the cavitation effect, which provides an essential part of hydrophobic interactions due to the formation of protein-ligand complexes, are discussed. ... The main contribution to the cavitation effect is due to the annihilation of the cavity of the ligand. ... PostScript (in Russian) (14.1MB) . PDF (in Russian) (697KB) . ...

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• "Calculation of molecular complexation free energy by thermodynamic integration
• "Complex supercomputer benchmarking"
• "A software complex for the analysis and visualization of monitoring and

... St. Petersburg, 194064, Russian Federation, +7-(812)-297-3740 A combination of ultraviolet (UV) and infrared (IR) absorption and circular dichroism (CD) spectroscopy was applied to investigate the structure and formation of large supramolecular DNA­protein complexes. ... In the presence of both proteins, mainly interactions in the DNA minor groove were observed, which were attributed to HMGB1 binding. ... Acting together, HMGB1 and H1 stimulated the formation of supramolecular DNA­protein structures...

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• MSM 2007

Электронная библиотека Попечительского совета . ... Yaglom I.M. - Complex Numbers in Geometry . ... Название: Complex Numbers in Geometry . Автор: Yaglom I.M. Аннотация: . ... Complex numbers, double 13 18-21 . Complex numbers, dual 12 14-18 . Complex numbers, ordinary 1-7 . ... Conjugate numbers 3 15 18 . ... Double numbers 13 18-21 . ... Generalized complex numbers 7 10 . ... Most general complex numbers 10-14 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Tsytovich V.N. (Ed), Morfill G.E. (Ed) - Elementary Physics of Complex Plasmas
• Harkins W.D., Wilson E.D. - The Structure of Complex Atoms and the Changes of
• Ehlen E. - Transient numerical simulation of complex convection effects during

LABORATORY OF NUCLEIC ACID-PROTEIN INTERACTIONS . ... Study of Natural Covalent Complexes of Nucleic Acids and Proteins . ... High sensitive tools and methods are developed in the laboratory for detection and identification of the viral and cellular nucleic acids and covalent complexes of RNA and proteins that contain the covalent linkage unit (CLU), which is identical to the CLU of the picornavirus VPg-RNA covalent complex. ... Antibodies against picornavirus RNA-VPg covalent linkage unit . ...

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Comparative mineralogy of carbonatite complexes belonging to different formations . ... I. Within well known formation of ultrabasic -alkaline rocks within carbonatites (UAC), the main rare metal ore components are Nb, Zr, REE Ce , rarely Sr, Ba, U, Ta, Th, as well as phosphorus in apatite, in zones of hypergenesis – minerals of crandallite group and others; fluorite, Fe in magnetite, rarely hematite and its hydroxides, sulfides of non-ferrous metals – Cu, Zn and others. ...

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• http://geo.web.ru/conf/alkaline/2009/Nedosekova.htm
• http://geo.web.ru/conf/alkaline/2009/Olysych.htm
• http://geo.web.ru/conf/alkaline/2009/Donskoy1.htm

... In this work, computational prediction of novel HIV-1 entry inhibitors presenting peptidomimetics of potent bNAb VRC01 that partially mimics binding of the cellular receptor CD4 to gp120 was carried out based on the analysis of the X-ray complex of this antibody antigen-binding fragment with the HIV envelope gp120 core [2]. ... In particular, the MMs02391040, MMs03919199, MMs02489375 and MMs03927127 compounds (Figure 1) form hydrogen bonds and salt bridges with Asp-368 of gp120. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/68.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/67.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/110.pdf

... Applications of Molecular Mechanics to Metal Complexes" . ... Molecular mechanics study of the mixed-ligand lanthanide complexes using Gillespie-Kepert model . ... Within MM-GK, the same parameters are applicable to complexes of different coordination numbers/polyhedra. ... Gillespie-Kepert model . ... Using derived computational parameters, we calculated the geometry of 39 lanthanide ion nonaaqua complexes, 6 octaaqua complexes and 18 beta- diketonate and aqua-beta-diketonate complexes. ...

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• Study of amino- and pyridyl-containing zinc(II) and cadmium(II) complexes by

... Войти в систему . ... Ivanov K.A. , Shulyapov S.A. , Ksenofontov P.A. , Tsymbalov I.N. , Volkov R.V. , Savel'ev A.B. , Brantov A.V. , Bychenkov V.Yu , Turinge A.A. , Lapik A.M. , Rusakov A.V. , Djilkibaev R.M. , Nedorezov V.G. в журнале Physics of Plasmas , издательство American Institute of Physics (United States) , том 21, с. 093110-093110 DOI . ... Fishgoit L.A. , Vykhodtseva L.N. , Kasyanov I.A. , Nedorezov V.G. , Safonov V.A. в журнале Advances in Materials Science , том 7, ? ...

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• Khenkin L.V. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Khriachtchev L. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Rasanen M. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

Diploma thesis «Infrared and terahertz pulsed spectroscopy of structural changes of proteins and model systems under the interaction with crown-ether» Spectroscopy of the biological molecules is a very important task of the modern science. Protein molecules are among interesting biological complexes. ... One of the possible mechanisms of this effect is formation of complexes of crown-ether with surface amino groups of protein. ... Supervisors: Doctor of Science, Assoc. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2011/Sosorev_Paraschuk_en.pdf
• Грант подробно

... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• NPIDB project. Introduction
• DNA/RNA-Protein structures
• S publications

... Scanning probe microscopy (SPM) allows the visualization of single protein molecules and their complexes with membranes. ... Antibodies . ... Self-assembly in protein-membrane systems . ... Self-assembled nanostructures form from membrane proteins, e.g. ATP-syntase and cytochrome P450 [5]. ... Kiselyova O.I., Yaminsky I.V. "Proteins and memrane-protein complexes" in Scanning Probe Microscopy of Biopolymers (Ed. by Yaminsky I.V., Scientific World, Moscow, 1997) p. 41. (in Russian). ...

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• INTAS-01-0045
• AFM OF RNA AND RNA-PROTEINS COMPLEXES
• DNA-surfactant complexes in organic media

. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• StructAlign help

... SH2 136: A Spooky Nebula . 30.10.2006 . The dark nebula SH2-136 appears to be celebrating Halloween all of the time. The complex process of star formation create dust clouds of many shapes and sizes -- it is human perception that might identify a ghoulish creature, on the right of the above image, chasing humans. ... Star EGGs in the Eagle Nebula . ... One place, star forming regions known as "EGGs", are uncovered at the end of this giant pillar of gas and dust in the Eagle Nebula (M16). ...

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• Астронет > Карта звездного неба, профессиональная версия
• LDN 988: Dark Nebula in Cygnus
• IC 1871: Inside the Soul Nebula

... Tel. 8(495)9368912, e-mail: roukkn@inbox.ru The thermodynamic model [1] developed for quantitative estimating cooperativity in supramolecular polymetallic assemblies has been applied to monometallic coordination complexes with neutral and anionic ligands and CN = 4, 6, as well as to octahedral complexes with bidentate ligands. ... Optimized parameter values for both models have been calculated by means of a least-squares fit in application to lgn. ...

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• http://www.mce.biophys.msu.ru/archive/doc37176/doc.pdf
• http://www.mce.biophys.msu.ru/archive/doc15597/doc.pdf
• http://www.mce.biophys.msu.ru/archive/doc60868/doc.pdf

... Curriculum Vitae Observations and theory of star cluster formation 22) A.K.Dambis and Yu.N.Efremov Journal for History of Astronomy, 31, 115-134, 2000 Dating Ptolemy's star catalogue through proper motions: the Hypparchan epoch 23) B.G.Elmegreen, Yu.N.Efremov, S.Larsen Astrophys. J., 535, 748 - , 2000 A young globular cluster in the galaxy NGC 6946 24) Yu.N.Efremov. ... 28) Yu.N.Efremov. ... The location of star complexes in the Galaxy was studied in papers with E.Alfaro, L.Berdnikov and T.Sitnik. ...

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