This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• wLake program homepage
• S : rm_systems

... This form lets you to produce a list of hydrophobic clusters in a PDB file specified by user. Enter a 4-letter PDB code, e.g.: 1apl : . Search clusters: . ... between chains . Contacts between chains . Set #1 . ... Enter your e-mail here (optional): . ... List of atoms Strict Wide . Chains filter (1-20:A) . Show clusters not smaller than atoms . User data file in PDB format . ...

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• Molecular biology databases
• ETS_all_contacts alignment
• ETS_3D_conservation

. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus
• StructAlign help

... file . ... Added allpy.util.Silence to faciliate running most code with as little noise as possible This class is intended for use around noisy chunks of code using `with`, e.g.:: with Silence(): structure = PDBParser().load_pdb(file) This will produce no output to stderr if no exceptions are raised in the code. ... 3 This release collects a lot of changes that happened during half year . ... 8 * greatly improved markups support and markups IO . ... 23 * new ( ! ... 79 * new : started NEWS file . ...

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• allpy: NEWS annotate
• allpy: c1091715f8a3 test/usecase2.py
• allpy: c1091715f8a3 test/usecase1.py

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• IGLA-3D User Guide
• Screening of pattern or alignment against PROTEIN databank
• Bioinformatics portal, Moscow State University

Электронная библиотека Попечительского совета . ... Peters C.A., Steenbrink J.H. - Mixed Hodge Structures . ... Название: Mixed Hodge Structures . Авторы: Peters C.A., Steenbrink J.H. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Haaland A. - Molecules and Models: The Molecular Structures of Main Group
• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Herzberg S. - Molecular Spectra and Molecular Structure I: Spectra of Diatomic

... real.msf - выравнивание пространственных структур. Отмечено и цветом, и в строке Align, где выравниваются только два белка, где три, а где все четыре. script.src - скрипт для выделения области (не всей данной, потому что разобрать на общей все петли - тяжело) и раскрашивания разных цепей в разные цвета . ... A YGRWE- C YGQWE- D -GFWLE E GASFK- . ... 1 50 A AEIYNKDGNK LDVYGKVKAM HYMSDN.. ... 51 65 A ETQINDQLTG YGRWE C ETQINDQLTG YGQWE D TEDLGGGLKA GFWLE E SGTTDSGLEF GASFK Align ********** ***** . ...

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• Функции белка UbiC
• Protein Structure of HSLU_ECOLI
• Conservative Amino Acid Residues

... Theochem) , J. Mol. ... JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM , Theochem-Journal of Molecular Structure . ... Rynin S.S. , Kulikov P.V. , Faustov V.I. , Boganov S.E. , Egorov M.P. , Nefedov O.M. в журнале Journal of Molecular Structure: THEOCHEM , издательство Elsevier BV (Netherlands) , том 942, ? ... Rastoltseva E.V., Bataev V.A. , Abramenkov A.V. , Pupyshev V.I. , Godunov I.A. в журнале Journal of Molecular Structure: THEOCHEM , издательство Elsevier BV (Netherlands) , том 939, ? ...

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• Journal of Molecular Structure - журнал | ИСТИНА - Интеллектуальная Система
• Biochimica et Biophysica Acta (BBA)/Protein Structure and Molecular Enzymology
• Journal of ultrastructure and molecular structure research - журнал | ИСТИНА -

... Langmuir-Blodgett (LB) technique becomes now an effective tool producing thin molecular films of desired composition and structure. Its development gave rise to numerous experimental investigations of LB films as nonlinear optical wave guides devices. ... It seems to show that effects of LB films structure on their nonlinear optical parameters are mainly connected with specifics of their local field distribution. ...

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• Kinetics of domain structure in ferroelectric thin films

... Previous message: [Comphep-common] Events to produce of LHAEF format . Next message: [Comphep-common] Events to produce of LHAEF format . ... Best regards, Lev В Пн., 23/07/2012 в 03:13 +0000, Ijaz Ahmed пишет: > Dear Lev, > I have all the stuff installed which is required for producing events, but i am not able to produce n_comphep.exe file from symbolic calculation and also not able to produce session.dat and batch.dat, which are necessary for numerical calculation to produce events. ...

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• MRS structure functions
• Structure of LanHEP input file
• General structure

Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods Aleksandra Vasileva3, Michael Kiening1, Dmitrij Frishman1, 1 2,3 Department of Bioinformatics, Technische UniversitДt MЭnchen ... 195251 , Russia, aleksandra.vasileva.spbpu@gmail.com mRNA molecules contain three main domains ­ 5'UTR (untranslated region), CDS ( coding region), and 3'UTR ... One of the options in this case is to compute the distance between two RNA structures. ... Fig. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/146.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf

... The molecular structure of 2-chloroacrolein was reinvestigated by means of gas-phase electron diffraction, ab initio MO calculations and vibrational analysis. ... In the electron diffraction analysis, the bond length and bond angle difference predicted by ab initio calculations of the conformers were assumed. ... Conformational composition and geometrical parameters obtained from the electron diffraction analysis are in agreement with the results from ab initio calculations. ...

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• Molecular Structure and Conformations of Bicyclopentyl, C5H9-C5H9, as Studied
• Dielectric Properties and Molecular Structure of the Liquid Unsaturated
• Molecular Structure and Physicochemical Properties of Acetone-Chloroform...

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite
• Site Cluster
• RNA Alignment

... Molecular structure and dynamics of the dimeric human small heat shock protein HSPB6. ... ATP-independent small heat-shock proteins (sHSPs) are an essential component of the cellular chaperoning machinery. ... We addressed the three-dimensional structure and functional properties of HSPB6 in a hybrid study employing X-ray crystallography, solution small-angle X-ray scattering (SAXS), mutagenesis, size-exclusion chromatography and chaperoning assays. ...

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• Structure, properties, and probable physiological role of small heat shock
• The role of intrinsically disordered regions in the structure and functioning
• Effect of mutations in the beta5-beta7 loop on the structure and properties of

Data structuring and formalization in the hybrid database on molecular spectral constants (ISMOL)" . Kochikov I.V., Kuramshina G.M., Samkov L.M., Sharapov L.A., Sharapova S.A. This paper presents the principles of data representation and structuring in the information system ISMOL - a hybrid database on molecular constants of organic compounds existing in raw oil and its refinement products. ... Kochikov I.V. e-mail: kochikov@tm-net.ru . Kuramshina G.M. e-mail: kuramshi@phys.chem.msu.ru . ...

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• "Simulation of a molecular structure formation as a result of thermal
• Composition of infinitary structures
• "The MEL program for the atomistic modeling of functional layers in solar...

... История кафедры . ... младших курсов . ... Уважаемые студенты 1-го, 2-го и 3-го курсов! ... Семинар кафедры проходит по пятницам в 15.20 в комн. ... а также на стендах кафедры на 2-м и 4-м этажах. Информацию о более ранних событиях см. в разделе "Жизнь кафедры" . ... 119991, Москва, Ленинские горы, д.1, стр.2, МГУ имени М.В.Ломоносова, физический факультет, кафедра фотоники и физики микроволн . ...

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... 3.0.8 - 3.0.18 only, PHP 4 >= 4.0.0) xml_parse_into_struct -- Parse XML data into an array structure . ... php class AminoAcid { var $ name ; // aa name var $ symbol ; // three letter symbol var $ code ; // one letter code var $ type ; // hydrophobic, charged or neutral function AminoAcid ($aa) { foreach ($aa as $k= $v) $this- $k = $aa[$k]; } } function readDatabase($filename) { // read the xml database of aminoacids $data = implode( ,file($filename)); $parser = xml _parser_create(...

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• Alternative syntax for control structures
• require
• Control Structures

... About lab . ... The LidarK library provides an open-source framework for processing multidimensional point data such as 3D LIDAR scans. ... Download LidarK 2.0 , or browse for the previous versions and data samples . ... We called the data structure we designed Seg-Tree . ... GML LidarK Library v. 2.0 September 10, 2010 Download . GML LidarK Library v. 1.2 December 5, 2008 Download . GML LidarK Library v. 1.1 September 9,2008 Download . GML LidarK Library v. 1.0 July 1, 2008 Download . ...

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• GML LidarK Library | Лаборатория компьютерной графики и мультимедиа
• Reconstruction of structure and texture of city building facades. | Graphics
• Reconstruction of structure and texture of city building facades. | Лаборатория

Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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• DVM-system. Goals and structure