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1721. allpy: sandbox/common.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . allpy: start moving to new class interfaces . author . boris (netbook) <bnagaev@gmail.com> . date . Tue, 30 Nov 2010 17:10:25 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/346a6cd4fc1d/sandbox/common.py -- 3.6 Кб -- 02.03.2014
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1722. allpy: sandbox/common.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . repeats: output improvements . author . boris <bnagaev@gmail.com> . date . Wed, 24 Nov 2010 00:35:30 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/32d244bf868a/sandbox/common.py -- 3.5 Кб -- 02.03.2014
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1723. allpy: repeats/config.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . allpy: start moving to new class interfaces . author . boris (netbook) <bnagaev@gmail.com> . date . Tue, 30 Nov 2010 17:10:25 +0300 . parents . children . ae2f0cadb73e . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/346a6cd4fc1d/repeats/config.py -- 3.6 Кб -- 02.03.2014
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1724. allpy: blocks3d/Kliki.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . fix lib/sequence.py. bug when pdb chain is empty string . author . boris <bnagaev@gmail.com> . date . Mon, 24 Jan 2011 21:40:10 +0300 . parents . children . 4e6e85851133 . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/3048f18154ef/blocks3d/Kliki.py -- 3.6 Кб -- 02.03.2014
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1725. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . fix lib/sequence.py. bug when pdb chain is empty string . author . boris <bnagaev@gmail.com> . date . Mon, 24 Jan 2011 21:40:10 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/3048f18154ef/blocks3d/html.htm -- 3.5 Кб -- 02.03.2014
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1726. allpy: repeats/config.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . repeats: 1) Repeat --> Interval, RepeatGroup --> IntervalGroup 2) drop useless class RepeatPair 3) tidy doctest 4) interval.__eq__ and __ne__ 5) output: remains only unique interval . author . boris <bnagaev@gmail.com> . date . Sat, 27 Nov 2010 22:41:18 +0300 . parents . children . ae2f0cadb73e . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/30238d84d597/repeats/config.py -- 3.7 Кб -- 02.03.2014
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1727. allpy: sandbox/common.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . repeats: 1) Repeat --> Interval, RepeatGroup --> IntervalGroup 2) drop useless class RepeatPair 3) tidy doctest 4) interval.__eq__ and __ne__ 5) output: remains only unique interval . author . boris <bnagaev@gmail.com> . date . Sat, 27 Nov 2010 22:41:18 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/30238d84d597/sandbox/common.py -- 3.7 Кб -- 02.03.2014
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1728. allpy: blocks3d/Kliki.py diff
... diff . ... find changesets by author, revision, files, or words in the commit message . Implemented base processor for realignments (see #23) Base processor ExternalCommand applies external command to block. Base processor saves block as fasta, runs external command and reads it from fasta . author . ... line diff . ...
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2f8f56f22691/blocks3d/Kliki.py -- 3.7 Кб -- 02.03.2014
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1729. allpy: blocks3d/html.htm diff
... diff . ... find changesets by author, revision, files, or words in the commit message . Implemented base processor for realignments (see #23) Base processor ExternalCommand applies external command to block. Base processor saves block as fasta, runs external command and reads it from fasta . author . ... line diff . ...
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2f8f56f22691/blocks3d/html.htm -- 3.7 Кб -- 02.03.2014
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1730. allpy: blocks3d/Kliki.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . align allpy_pdb.py with changes in graph.py . author . boris <bnagaev@gmail.com> . date . Thu, 03 Feb 2011 13:56:57 +0300 . parents . 3161cdaf2ff9 . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2ac62edd1c3e/blocks3d/Kliki.py -- 3.6 Кб -- 02.03.2014
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1731. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . align allpy_pdb.py with changes in graph.py . author . boris <bnagaev@gmail.com> . date . Thu, 03 Feb 2011 13:56:57 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2ac62edd1c3e/blocks3d/html.htm -- 3.5 Кб -- 02.03.2014
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1732. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . Automated merge with ssh://kodomo/allpy . author . Daniil Alexeyevsky <me.dendik@gmail.com> . date . Tue, 25 Jan 2011 16:03:00 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2785ca30cea5/blocks3d/html.htm -- 3.6 Кб -- 02.03.2014
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1733. allpy: blocks3d/Kliki.py diff
... diff . ... Automated merge with ssh://kodomo/allpy . ... line diff . 1.1 --- a/ blocks3d / Kliki.py Mon Jan 24 21:40:10 2011 +0300 1.2 +++ b/ blocks3d / Kliki.py Tue Jan 25 16:03:00 2011 +0300 1.3 @@ -34,14 +34,14 @@ 1.4 1.5 compsub - полный подграф для данного шага 1.6 ... .48 self.timeout = timeout 1.49 @@ -95,40 +95,40 @@ 1.50 while deleted: 1.51 1.52 deleted = 0 1.53 - 1.54 + 1.55 for atom, c in connections .items(): 1.56 - 1.57 + 1.58 if c min_size: 1.59 - 1.60 + 1.61 del ...
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2785ca30cea5/blocks3d/Kliki.py -- 37.1 Кб -- 02.03.2014
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1734. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . allpy_pdb: fixes * use fast_cliques (untill cliques() has some bugs) * fix . author . boris <bnagaev@gmail.com> . date . Wed, 02 Feb 2011 17:25:03 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2438983a91c4/blocks3d/html.htm -- 3.5 Кб -- 02.03.2014
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1735. allpy: blocks3d/Kliki.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . Renamed Alignment.from_file -> Alignment.append_file . author . Daniil Alexeyevsky <me.dendik@gmail.com> . date . Wed, 26 Jan 2011 20:45:34 +0300 . parents . 3161cdaf2ff9 . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/27733e1f2be0/blocks3d/Kliki.py -- 3.7 Кб -- 02.03.2014
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1736. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . Renamed Alignment.from_file -> Alignment.append_file . author . Daniil Alexeyevsky <me.dendik@gmail.com> . date . Wed, 26 Jan 2011 20:45:34 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/27733e1f2be0/blocks3d/html.htm -- 3.6 Кб -- 02.03.2014
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1737. allpy: blocks3d/Kliki.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . allpy_pdb: fixes * use fast_cliques (untill cliques() has some bugs) * fix . author . boris <bnagaev@gmail.com> . date . Wed, 02 Feb 2011 17:25:03 +0300 . parents . 3161cdaf2ff9 . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/2438983a91c4/blocks3d/Kliki.py -- 3.6 Кб -- 02.03.2014
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1738. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . graph: reimplement bron_kerbosh with yields . author . boris <bnagaev@gmail.com> . date . Thu, 03 Feb 2011 14:49:33 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/223df1ee4c21/blocks3d/html.htm -- 3.5 Кб -- 02.03.2014
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1739. allpy: blocks3d/Kliki.py diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . graph: reimplement bron_kerbosh with yields . author . boris <bnagaev@gmail.com> . date . Thu, 03 Feb 2011 14:49:33 +0300 . parents . 3161cdaf2ff9 . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/223df1ee4c21/blocks3d/Kliki.py -- 3.6 Кб -- 02.03.2014
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1740. allpy: blocks3d/html.htm diff
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . Add generator of codes.py file (rels #16) Generator needs template and components.cif file (currently not provied) . author . boris <bnagaev@gmail.com> . date . Tue, 25 Jan 2011 15:53:42 +0300 . parents . children . line diff .
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Ссылки http://kodomo.fbb.msu.ru/hg/allpy/diff/1c06c34c4df2/blocks3d/html.htm -- 3.6 Кб -- 02.03.2014
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