. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . children . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . 73f57a30831f . children . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . e7d60bf1dfd8 . children . 08d892230e8c . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . cc1959669928 . children . 08d892230e8c . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . 3c32489fcb3b . children . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . 149cb9d89283 . children . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . faa7e19bffd9 . children . line diff .
. log . graph . tags . bookmarks . branches . changeset . browse . file . latest . diff . annotate . file log . raw . help . find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> . date . Mon, 26 May 2014 17:20:29 +0400 . parents . af1de9132035 . children . 08d892230e8c . line diff .
log . ... file . ... file log . ... find changesets by author, revision, files, or words in the commit message . blocks3d/www Makefile: never check certificates of github, they are too confusing for wget . author . ... Mon, 26 May 2014 17:20:29 +0400 . ... path . ... dirname ( __file__ ), . ...
... 1 import base . 2 import data.codes . ... 4 import protein . ... 6 class Monomer ( base . Monomer ): . 7 """Protein monomers: aminoacids.""" . 8 type = 'protein' . 9 types = protein . ... protein ) . ... 15 class Protein ( list ): . 16 """User defined protein; list of protein_sequences.""" . ... 19 class Sequence ( base . ... 22 class Column ( base . ... 25 class Alignment ( base . Alignment ): . ... 28 class Block ( Alignment , base . ...
... 3 from allpy import protein . ... 6 # Create sequences from string representation of sequence body . 7 sequence_1 = protein . ... 10 # Create alignment from sequences . 11 alignment = protein . ... 16 # For each sequence, print number of gaps and non-gaps in alignment . ... 20 for column in alignment . ... 25 print " %s : %s gaps, %s non-gaps" % ( row . ... 27 # Print number of gaps in each column . ... 30 column_gaps = 0 . 31 for sequence in alignment . ... append ( column_gaps ) . ...
... file . ... file log . ... find changesets by author, revision, files, or words in the commit message . ... author . ... Mon, 11 Jul 2011 22:12:50 +0400 . Boris Burkov . realtive paths in sbbs_2009 are made relative to programs, not to working directory . Sat, 09 Jul 2011 16:30:28 +0400 . ... sbbs_2009 created. test_homology.py contains function that writes classes of homology to file. less more | ...