log . ... Wed, 02 Nov 2011 19:42:48 +0300 . Daniil Alexeyevsky . ... Thu, 13 Oct 2011 16:28:26 +0400 . ... Thu, 21 Jul 2011 14:23:12 +0400 . ... Wed, 14 Dec 2011 22:05:00 +0400 . ... Wed, 20 Jul 2011 19:17:03 +0400 . ... Wed, 14 Dec 2011 19:45:57 +0300 . ... Mon, 28 Nov 2011 18:33:25 +0300 . ... Tue, 22 Nov 2011 00:13:40 +0300 . ... Automated merge with ssh://kodomo/allpy . ... Boris Nagaev . ... Fri, 04 Nov 2011 13:38:28 +0300 . ... Thu, 03 Nov 2011 23:34:03 +0300 . ...

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• allpy: 41f7241c2aeb

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• ETS sequence conservation
• ETS_all_contacts alignment

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Timeline . ... View Tickets . ... done by Repository changesets Milestones reached Tickets opened and closed . 21:09 Changeset [11:0ece930a4d1b] by Daniil Alexeyevsky <me.dendik@?> . ... 21:02 Changeset [10:f25c0439251f] by Alex Martynov <martiran@?> . ... fixed: Это я помню, в змее то они будут представлены как список =) Все - ? ... 01:32 Ticket #12 (Идеи на будующее) created by martiran . ... 17:30 Ticket #11 (trac не реагирует на магические коммиты вида closes #id, refs #id) created by dendik . ...

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• Timeline ? Tanchiki
• Ucheba

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• S : rm_systems
• Example of alignment

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Notes on searching by similarity
• Bioinformatics portal, Moscow State University
• Screening of pattern or alignment against PROTEIN databank

... Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . ... Название: A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . Авторы: Lathrop R.H., Rogers Jr R.G., Smith T.F. Аннотация: . A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. ...

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• Kechris A.S., Louveau A. - Descriptive Set Theory and the Structure of Sets of
• Morris S. - Pontryagin Duality and the Structure of Locally Compact Abelian
• Veltkamp R.C. - Closed Object Boundaries From Scattered Points :: Электронная

Routing on lattice-cellular structures" . Ryabov G.G. An extension of the class of lattice graphs is considered. In order to become close to the Euclidean metric, inclusion of additional ribs with weights equal to the corresponding lengths of vectors in the Euclidean space is performed in a neighborhood on the lattice. ... An algorithm for constructing a set of the shortest paths on such a lattice is proposed. ... PostScript (in Russian) (6.04MB) . PDF (in Russian) (710KB) . ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Align tool for DNA-protein complexes
• Nhunt: program for nucleic acid sequence similarity search

... LDAP is the Lightweight Directory Access Protocol, and is a protocol used to access "Directory Servers". ... Search surname entry $sr= ldap _ search ($ds, o=My Company, c=US , sn=S* ); echo Search result is .$sr. p ; echo Number of entires returned is . ldap _count_ entries ($ds,$sr). p ; echo Getting entries ... p ; $info = ldap _ get _ entries ($ds, $sr); ... ldap_get_attributes -- Get attributes from a search result entry . ... ldap_get_entries -- Get all result entries...

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• Alternative syntax for control structures
• imap_close
• pg_close

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Not so well documented Device Helpers in OS/2
• Image: Downtown as viewed from the John Hancock Tower. The building closest to
• Image: Flower of lotus. Unfortunately, I was unable to come close.

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/39.pdf

... Sun , 19 Dec 2010 19:49:53 GMT Daniil Alexeyevsky me.dendik@тАж [41:bcad0f5464bf] * snake.py ( modified ) snake.Rule.load: give reasonable error rather than crash on empty lines Sun , 19 Dec 2010 19:46:39 GMT Daniil Alexeyevsky me.dendik@тАж [40:94945f11c78d] * snake.py ( modified ) snake.Snake.fill: tail takes precedence over body head Sun , 19 Dec 2010 19:45:31 GMT Daniil ...

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• http://kodomo.cmm.msu.su/trac/snake/log/?format=changelog&rev=46%3A85221e4417b7&limit=100&mode=stop_on_copy
• http://kodomo.cmm.msu.su/trac/snake/log/?format=changelog&rev=acaa43cb15ad761019fa9e75421d5a37a756a7ee&limit=100&mode=stop_on_copy
• http://kodomo.cmm.msu.su/trac/snake/log/?format=changelog&rev=45%3Aacaa43cb15ad&limit=100&mode=stop_on_copy

Prague, August 16, 2006 . ... Large classes (groups of types) : . ... Eruptive variable stars . ... Pulsating variable stars . ... Rotating variable stars . ... Cataclysmic (explosive and nova-like) variables . ... Close binary eclipsing systems . ... Optically variable close-binary sources of strong variable X- ray radiation . ... These classes are just a   way to group types; in our opinion, they can be kept if slightly better described ( e.g ., remove close from item 5, simplify item 6) ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE
• SAL- Scientific Data Processing Visualization - Software Packages - GMV
• APOD: January 4, 1998 - Fractal Interstellar Dust Up Close

Prague, August 16, 2006 . ... Large classes (groups of types) : . ... Eruptive variable stars . ... Pulsating variable stars . ... Rotating variable stars . ... Cataclysmic (explosive and nova-like) variables . ... Close binary eclipsing systems . ... Optically variable close-binary sources of strong variable X- ray radiation . ... These classes are just a way to group types; in our opinion, they can be kept if slightly better described ( e.g ., remove close from item 5, simplify item 6) ...

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The existence of oceanic islands and seamounts is supposed to be the one of the main evidence of the plate tectonic theory. But there is no such acient geological object which could be so similar to rock complex of oceanic island. These structures must include the alkaline magmatism manifestation, sedimentary rocks close to recent riff limestone on the oceanic islands and sequence of terrigenic rocks. ... 100.00 . ... H 2 O calculated by the 100% norm of cations. d.l.. ...

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.

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• PubMed medline query

... The first-order intermolecular perturbation theory developed in the frame of diatomics-in-molecule approach is used to calculate the potential energy surfaces of the Ar.. Cl2 complex in the states which correlate with the X0g+ and B0u+ states of Cl2 fragment. ... Laboratory of Molecular Structure and Quantum Mechanics ...

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• PC Crystal Chemistry Analysis of Organic Crystal Structures
• M. Ya. Melnikov, V.A. Smirnov Handbook of Photochemistry of Organic Radicals
• The Molecular Structure of 2-Chloroacrolein Studied by Gas Electron

Astronomy Picture of the Day . ... Tonight and over the next few days, when Mars is at its closest approach to Earth in nearly 60,000 years, you might get your best view ever of our planetary neighbor. Please, though, don't expect to see this much structure , or expect to see Mars rotate so much in so brief a period. ... In reality, one full Martian rotation -- a Martian day -- is only about 40 minutes longer than an Earth day. ... Publications with keywords: Mars . ... Victoria Crater on Mars . ...

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• Journal "Peremennye Zvezdy"
• Астронет > Earth Webcam Catches Mars Rotation
• The Double Nucleus of M31

Next: SYSTEM CALL: msgget() Up: Internal and User Data Previous: Kernel msqid_ds structure . The kernel stores permission information for IPC objects in a structure of type ipc_perm . ... struct ipc_perm { key_t key; ushort uid; /* owner euid and egid */ ushort gid; ushort cuid; /* creator euid and egid */ ushort cgid; ushort mode; /* access modes see mode flags below */ ushort seq; /* slot usage sequence number */ }; . ... Finally, the slot usage sequence number is stored at the end. ...

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• The Linux Kernel: Table of Contents
• SYSTEM CALL: msgctl()
• The boot process in closer look