... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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• Align tool for DNA-protein complexes

Theory of filtering and time series processing L. Zotov Laboratory work ?6 Purpose: Studying singular spectral analysis SSA. We use Matlab software (look into the Lab N1). 1) Download the program and additional module for the lab from http://lnfm1.sai.msu.ru/grav/english/lecture/filtering/ Study the SSA package on examples. 2) Download and install program from http://www.gistatgroup.com/cat/cat33.exe Study it. Visit http://www.gistatgroup.com/gus/examples.html

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• http://lnfm1.sai.msu.ru/grav/english/lecture/filtering/Lab5.doc
• Leonid Zotov
• IDL programs

... Given package is a set of special commands and their handler - JOB program. The command aimed for description of often performed operations with files of PC-GAMESS program (dat, out, pun). ... Commands allow running calculation, performing other programs, data change between files and modification of files. ... Command inserts specified group in file.inp. ... del_g h2o.dat |Command deletes all repetition of| |$basis |specified group in file.inp. ... Command changes contents of group on specified | ...

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• PC GAMESS/Firefly DOCUMENTATION - 64-bit processing support
• Firefly v. 8.0.0 documentation - XP parallel modes of execution
• PC GAMESS/Firefly DOCUMENTATION - running in parallel using LAM/MPI

... Run program . User's guide . Launching program . Input data format . ... Selecting the number of correlated pairs . ... In order to run thr program one needs Java 5.0 environment. ... At the end of computations one will be asked to review the selected number of correlated pairs. ... Note: One may redefine the number of correlated pairs by selecting the 'Edit' -> 'redefine correlated pairs number' menu item. Correlated pairs of positions are presented as a colored matrix, the heatmap. ...

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... 13 ALLSPHINXOPTS = -d $( BUILDDIR ) /doctrees $( PAPEROPT_ $( PAPER )) $( SPHINXOPTS ) source . ... 18 @echo "Please use \`make <target>' where <target> is one of" . 19 @echo " html to make standalone HTML files" . 20 @echo " dirhtml to make HTML files named index.html in directories" . ... 23 @echo " htmlhelp to make HTML files and a HTML help project" . 24 @echo " qthelp to make HTML files and a qthelp project" . ... 64 @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/allpy.qhcp" . ...

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• cca: a308291203ea Help/Help.html
• allpy: b412a580e998 sandbox/ttk.py
• cca: Help/Help.html annotate

... The main problem is increasing the recognition rate of some recognition engines, working in some restricted domains, such as telephone time-table question-answer systems and so on. ... Our algorithms allow user to get recognition variants, which are right sentences in some formal language. ... We suppose that BRE can produce a set of recognition variants in the form of the "complex chain". ... Length of complex chain is the number of vertexes in its graph. ... const*n^2 . ...

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• Intelligent Systems :: Teaching :: Seminars :: Список специальных семинаров
• General Information

extra:main ]] . CompHEP . ... Script for including cuts, kinematics, or regularizations into batch.dat file . Script for CompHep cross-sections energy dependence calculation . ... When you done CompHep calculations for the process under study at one energy, you may easely get cross-sections energy dependence running script cs_energy_dep.pl . ... For every energy point the script modifies results/batch.dat file and runs CompHep script num_batch.pl to calculate given process cross-sections. ...

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• overview [CompHEP]

... This class implements yellow sticky notes on WPS as a learning process for SOM/WPS. ... Proposed directory for placement: /pub/os2/dev/wps Your name: Martin Iturbide Email address: martin@os2world.com Program contact name: Lars Erdmann Program contact email: (same) Program URL: http://www.edm2.com/index.php/PostWhat_WPS_Class_Example Would you like the contact email address included in listings? yes Operating System/Version: Additional requirements: SOM compiler. ...

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• Use of program libraries
• Argument association
• Tutorial on Fortran 90, Digital UNIX

... О UNИX . ... XML Pages & XSLT Processing . ... Also, you have to specify the stylesheet that is to be used to process the XML document to HTML. ... See the following example for details, which can also be found on the XsltVersion page. ? xml version= 1.0 encoding= UTF-8 ? ? xml -stylesheet href= XsltVersion type= text/ xml ? xsl :stylesheet version= 1.0 xmlns: xsl = http://www.w3.org/1999/ XSL /Transform xsl :output method= html omit- xml -declaration= yes indent= no / ...

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• HelpOnInstalling/BasicInstallation - UNИX
• HelpOnProcessingInstructions - UNИX
• HelpOnInstalling/ApacheOnWin32withFastCgi - UNИX

A Quick Guide To UNIX This is an introduction to the UNIX operating system. ... More information on the options, the effects and how to use the commands is available by using the man command : man gives manual information on a topic man grep displays the manual page about grep Another useful source of information is the on-line EMBnet tutorial which includes a page on UNIX FILES ls more lists files in a directory ls -alF lists -a all ...

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• WikiProcessors тАУ Tanchiki
• Help: urls
• Help: templating

... Лаборатория теоретической биофизики . ... FRAP kinetics can be measured from image series directly with numpy libraries. ... Here we provide script that helps you to remove sample motion and obtain FRAP kinetics from image series with console script. ... Here oribl is a small image and _im is full image. ... Нет комментариев " Python script for processing FRAP image set " . ... Python script for processing FRAP image set . ... 2015 ERG Research Group . ...

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• python ERG Research Group: Лаборатория теоретической биофизики
• Using spherical functions (from A.Granovsky manual) ERG Research Group:
• All-atom automatic OPLS-AA topology generator ERG Research Group: Лаборатория

... Institute Laboratory-Chairs . ... Laboratory-chair of causal mechanics . ... Two experimental setups for study of Kozyrev's transaction of the dissipative processes had been created. ... Existence of Kozyrev's transaction of the geophysical dissipative processes of various nature: synoptical, geoelectromagnetic, ionospheric ones and also the solar activity has experimentally been shown. ... Existence of retarded, zero and symmetrically advanced time lay in nonlocal transaction has been confirmed. ...

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• Laboratory-chair of Discrete mechanics on a microscopic scale
• Russian Interdisciplinary Temporology Seminar

LangueDOC . ... Texts . ... Apply the program BoxReader to transform the Toolbox document into an XHTML formtat that uses nested tags to represent structure. ... Apply an XSLT stylesheet to transform the XHTML file into the content.xml of the OpenOffice format. ... Add the resulting content.xml into a complete OpenOffice text document replacing the old content.xml . ... Apply the converse XSLT transform to obtain the document in the XHTML nested-span format that can be displayed in the browser . ...

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• LangueDOC :: Archi :: Alphabet
• International Congress of Russian Language researches - preliminary program

Literature . ... Computers and Statistical Data Analysis. ... In Russian. ... Basic notions and methods of applied statistical analysis and usage of leading Russian and American statistical software tools: STADIA, STATGRAPHICS. ... The second edition has much more detailed depiction of temporal series analysis methods, review of statistical packages for Windows and recommendations on their choosing. ... Kulaichev A.P. Data Analysis Methods And Tools for Windows . ... In English and In Russian. ...

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... Scientific Laboratories . Science . ... Home Science and education Scientific Laboratories Laboratory of Nonlinear Spectroscopy of Ultrafast Processes in Condensed Matter . ... Nonlinear spectroscopy of condenced matter - semiconductors, HTSC, metals, quantum-size structures, etc. ... 1995-2001: task 7.15 of the State Scientific-Technical Program "Physics of Quantum and Wave Phenomena", direction "Fundamental Spectroscopy", the Ministry of Science, Russian Federation . ...

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• "Computers and measurements" practical course laboratory
• Conference on Photo-Excited Processes and Applications

QUANTUM STOCHASTIC PROCESSES This course is for 4-5th year and graduate students. ... It is dedicated to systematic account of Quantum Stochastic Processes right in the form they are actually used in theoretical calculations of Quantum Open Systems. ... LECTURE 2. ... Open systems and quantum stochastic processes. Mathematical definition of an open system and quantum stochastic process. ... Markovian quantum stochastic processes. Formal definition of quantum markovian stochastic process. ...

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• Quantum Information Lab, Int'l Laser Ctr. and Faculty of Physics, M.V.Lomonosov

Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... VarQUERYSTRING 3 - 2005-03-27 - Main.TWikiContributor . ... name="TWikiVariables" . ... String of all the URL parameters that were on the URL used to get to the current page. ... Note: URLs built this way are typically restricted in length, typically to 2048 characters. If you need more space than this, you will need to use an HTML form and %QUERYPARAMS% . ... Related: QUERYPARAMS , URLPARAM . ...

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• %TOPICTITLE% (1 vs. 2) - TWiki
• IfStatements - TWiki - TWiki - (printable)
• TextFormattingFAQ - TWiki - TWiki

Mathematical modeling of the two-dimensional process of changing groundwater levels under gravity by the method of discrete singularities" . Nikol'skii D.N., Dorofeeva V.I. A new mathematical model for the two-dimensional process of groundwater hill subsidence is proposed. The model is tested with the use of known solutions to the plane problems. ... Keywords: free-surface evolution, method of integral equations, method of discrete singularities . ...

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• "The package of application programs for the robust multigrid technique:
• "Heuristic algorithms of mapping MPI-programs onto multicluster computer and
• "A program environment for mesh generation, refinement, and partition and for

Geant4 toolkit for simulation of HEP experiments V.Ivanchenko From name of Geant4 collaboration BINP, Novosibirsk, Russia & CERN, Geneve, Switzerland Outline Geant4 history Design and tools Geant4 physics June 2002 release Prospects for future June,24 ACAT-2002 V.Ivanchenko Geant4 2 History 90th: About 100 FORTRAN MC programs in the world. The most popular in HEP GEANT3. ...

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• http://acat02.sinp.msu.ru/presentations/kolbasova/acat.pdf
• http://acat02.sinp.msu.ru/presentations/GGtut/Dev-06-ResourceManagement1.pdf
• http://acat02.sinp.msu.ru/presentations/litinski/litinski.doc

... An experimental data and discussion on the problem of the chemical development of ultra fine-grained AgBr crystals under flash action are presented. To reveal the common features and differences in the effect of electric current and extreme contrast developers acting in AgBr grains the influence of different factors on kinetics of the chemical development process of ultra fine-grained AgBr crystals were studied. ...

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• Science Department
• Moscow University Chemistry Bulletin Vol. 52, No. 1, P. 36 (2011)
• Moscow University Chemistry Bulletin Vol. 47, No. 3, P. 168 (2006)