... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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• ConClus
• Align tool for DNA-protein complexes

Sequence alignment of non-superposable beta-sheets Evgeniy Aksianov Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia, evaksianov@gmail.com Andrey V. Alexeevski Belozersky Institute, Lomonosov Moscow State University, Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia aba@belozersky.msu.ru Protein 3D structures usually are more conserved than their sequences. ... Beta-strands are contained in sheet map rows. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/17.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/60.pdf

Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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• Lib-DVM. Interface description

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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. Name . Last modified . Size . Description . Parent Directory . - . License . 26-Sep-2011 12:35 . 281 . docinfo . 26-Sep-2011 12:35 . 395 . docinfo.html . 26-Sep-2011 12:35 . 1.5K . index.html . 26-Sep-2011 12:35 . 25K . Apache/2.2.16 (Debian) Server at uneex.mithril.cs.msu.su Port 80

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• Index of /static/LibraryGnomeOrg_Totem
• Index of /static/LibraryGnomeOrg_Rhythmbox
• Index of /static/LibraryGnomeOrg_Ekiga

... They in fact form surfaces that can be treated as interfaces between polar aqueous solutions and non-polar environment of phospholipidic side chains. ... That's why our idea was to study the behaviour of amino acid residues, as monomer units of proteins, in an interfacial system. Objective By means of molecular dynamics simulations we intended to study the properties of amino acid residues in a system containing liquid-liquid interface between water and hexane, which we took as a non-polar phase. ...

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• LCOptimizer Software

Series on Stability, Vibration and Control of Systems, Series A - Vol. ... MULTIPARAMETER STABILITY THEORY WITH MECHANICAL APPLICATIONS . ... This book deals with fundamental problems, concepts, and methods of multiparameter stability theory with applications in mechanics. ... Introduction to Stability Theory . ... Read Full Review . ... Since Bolotin's pioneering book on nonconservation problems on the theory of elastic stability, not many books appeared at such a high level, such as this one. ...

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... MPI . ... Add MPI to your path % set path = ( $path /usr/local/mpi/bin ) Compute pi to a given resolution on 8 processors or threads % mpirun -np 8 /usr/local/mpi/examples/basic/fpi Try 10000 intervals at the prompt. ... A coarse timing program is also available here % mpirun -np 8 /usr/local/mpi/examples/basic/systest More sophisticated timing programs may be found in the source for the MPICH implementation of MPI (/home/MPI/mpich/examples/perftest). ... See COPYRIGHT for details. ... Центры . ...

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• Derived datatypes | PARALLEL.RU - Информационно-аналитический центр по
• Documentation | PARALLEL.RU - Информационно-аналитический центр по параллельным
• Running an MPI Program | PARALLEL.RU - Информационно-аналитический центр по

We shall use an alias name WORK for the directory which has been created by the user during the CompHEP installation. It contains the following sub-directories and files: . models/ results/ tmp/ . ... The models directory contains files which describe physical models. ... The directory tmp is used for temporary files. The file tmp/safe keeps user settings between the sessions. ... A bug presenting in this file could be a reason for a fatal error in the beginning of the CompHEP session. ...

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• Description of particles
• Structure of LanHEP input file
• Install

... The role of intrinsically disordered regions in the structure and functioning of small heat shock proteins. ... Curr Protein Pept Sci. ... Small heat shock proteins (sHsp) form a large ubiquitous family of proteins expressed in all phyla of living organisms. ... Thus, disordered N- and C-terminal sequences play important role in the structure, regulation and functioning of sHsp. ...

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• Structure, properties, and functions of the human small heat-shock protein
• Structure and properties of chimeric small heat shock proteins containing
• Three-dimensional structure of alpha-crystallin domain dimers of human small

... The purpose of this work was to perform the computer analysis of amino acid sequences of inulinase from various producers, which creates preconditions to drawing up of forecasts concerning molecular features of enzyme, mechanism of catalysis, functional groups of the active center. ... Data on primary structures of inulinase we received in National Center for Biotechnology Information (http://www.ncbi.nlm.hin.gov/Entrez), alignment of amino acids sequences we spent at use of software package BioEdit...

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• Heat transfer in non-uniform by structure monodisperse system, containing

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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• Index of /data
• Index of /data/html_scop
• Index of /data/pdb_new

... Proceedings of the 4 th Intern.Conf. on Ecologocal Engineering for Wastewater Treatment. ... Taking the lignosulphonates of the different cationic form (Na + , Ca +2 , Al +3 or H + ) and fraction (low molecular mass and colloid fractions) compositions, we considered some series of colloid-chemical phenomena, which are the basic adsorption methods of water purification of cycle wastewater at the factories of wood and paper industries. ... J.Colloid Sci. 1960, v. 15, p. 452. ...

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• PC Crystal Chemistry Analysis of Organic Crystal Structures
• Dielectric Properties and Molecular Structure of the Liquid Unsaturated
• Synthesis of sandwich and half-sandwich complexes of Ti, Zr and Hf containing

TreeDL: a language for description of graph structures and operations on them" . Demakov A.V. Some methods of graph representation and processing in object-oriented languages are considered. Desirable features and a tool support of a language for description of graph structures and operations on them are analyzed. The TreeDL language having these features is described and compared with other approaches. PostScript (in Russian) (244KB) . ... Demakov A.V. e-mail: demakov@ispras.ru ...

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• "Implementation of the Lagrangian approach to the description of gas-particle
• "Automatic detection and description of supercomputer network infrastructure"

Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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• IDL programs

... This course is dedicated to the main principles, methods and techniques of parallel programming oriented at resolution of resource-intensive tasks physically and in non-linear optics in particular. The course offers profound description of popular techniques of parallel programming such as OpenMP and MPI. ... Rapid growth of productivity of the modern computing systems is achieved by using parallel processors and multicore systems. ... Antonov, A.S. Parallel Programming Using MPI. ...

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• Noise Meter
• FPGA Design

... For those who is interested in thermodynamic modeling . Yuri Shvarov . This page is aimed mainly at the users of the software package HCh for thermodynamic (equilibrium) modeling of (geo)chemical systems and processes. However, some files presented here may also be of some interest to those who do not use HCh. ... HCh for DOS . ... User's guide for the Unitherm program intended for maintaining thermodynamic databases and calculation of thermodynamic properties of substances . ...

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download:rn-031116 ]] . CompHEP . ... Documentation and help files . ... New scheme of work with initial beams and final composite particles was changed. If you have a private model and want to use them with CompHEP-4.4.0, you have to copy cpart1.mdl file to cpartN.mdl file where N is a number of your model by commands: cd path_to_user_working_directory/model cp cpart1.mdl cpartN.mdl . All new composite particles must be introduce into table by using edit model facilities. ... Downloads . ...

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• extra:main [CompHEP]
• install [CompHEP]
• news [CompHEP]

... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

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• Laboratory-chair of modelling the natural references of time

Starting from the PC GAMESS version 6.3, the support of the new proprietary parallel mode communication interface (which is called P2P interface) was implemented as the part of PC GAMESS. ... The PC GAMESS/Firefly specific parallel MP2 energy and energy gradient method=1 modules supports P2P communication model. ... The dynamic library in which the P2P interface is implemented. ... Starting from the PC GAMESS v. 6.4, the DLB (dynamic load balancing) functionality was added to P2P interface. ...

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• PC GAMESS/Firefly standard MCQDPT2 benchmark (using resolvent fitting code)
• Firefly/PC GAMESS standard MCQDPT2 benchmark results on modern hardware
• Firefly/PC GAMESS standard MP4 benchmark results on modern hardware