... Glossary of the laboratory-chair . ... Institute Laboratory-Chairs . ... Laboratory-chair of modelling the natural references of time . ... All natural systems are considered as hierarchic systems. ... These flows are called generating flows. ... The union of all sets of elements of a system's generating flows is considered as its space or medium. ... The formation, or the course of time, in systems is considered as changing the amount of substance of some generating flows in these systems. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• Site Cluster

ABaCUS . ... This analysis takes the form of an attempt to eliminate the reference or null hypothesis that there is no correspondence. ... ABaCUS creates and reads files containing observed data and uses it to generate reference genes according to one of several models, after which the test is performed and the null hypothesis accepted or rejected. ... ftp://ftp.bio.indiana.edu/molbio/evolve/abacus/ . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - Protein Structure
• SAL- Computer Graphics, Images Signals - Processing Visualization - Karma
• SAL- Computer Graphics, Images Signals - Processing Visualization -

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/96.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/217.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/106.pdf

... About lab . ... The LidarK library provides an open-source framework for processing multidimensional point data such as 3D LIDAR scans. ... Download LidarK 2.0 , or browse for the previous versions and data samples . ... We called the data structure we designed Seg-Tree . ... GML LidarK Library v. 2.0 September 10, 2010 Download . GML LidarK Library v. 1.2 December 5, 2008 Download . GML LidarK Library v. 1.1 September 9,2008 Download . GML LidarK Library v. 1.0 July 1, 2008 Download . ...

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• GML LidarK Library | Лаборатория компьютерной графики и мультимедиа
• High quality stereo-to-multiview generation | Graphics and Media Lab
• High quality stereo-to-multiview generation | Лаборатория компьютерной графики

... Structure and properties of chimeric small heat shock proteins containing yellow fluorescent protein attached to their C-terminal ends. ... Recombinant chimeras of small heat shock proteins (sHsp) HspB1, HspB5, and HspB6 containing enhanced yellow fluorescent protein (EYFP) attached to their C-terminal ends were constructed and purified. Some properties of these chimeras were compared with the corresponding properties of the same chimeras containing EYFP attached to the N-terminal end of sHsp. ...

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О лаборатории . ... Лаборатория теоретической биофизики . ... OPLS-AA topology generation is a very complex task because of huge amount of the atomtypes described this force field. ... We use OPLS-AA with some includings; ?includings? are overlays on the standart GROMACS forcefield files. ... All-atom automatic OPLS-AA topology generator . ... comcon1 in All-atom automatic OPLS-AA topology? . ... OPLS-AA? in All-atom automatic OPLS-AA topology? ... 2011 ERG Research Group . ...

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• Nanotubes generating script for PyMol ERG Research Group: Лаборатория
• All-atom automatic OPLS-AA topology generator ERG Research Group: Лаборатория
• toolset ERG Research Group: Лаборатория теоретической биофизики

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• S : rm_systems

... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• HTH3_numeration_assumed
• ETS numeration assumed
• Homeodomain numeration assumed

... The project was initiated by Edward Boos, Viacheslav Ilyin and Victor Savrin. ... The main author of the CompHEP software is Alexander Pukhov. ... The program produced a code for calculation of squared diagrams, written in the Reduce symbolic manipulation language. ... In 1991 CompHEP got the built-in symbolic manipulation package created by A. Pukhov and the Fortran code output written by A. Pukhov and S. Shichanin [ 10 ]. ... They also contribute to and are responsible for debugging the package. ...

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• Getting started with LanHEP
• Interaction of the Higgs doublet with fermions and generation of fermion masses
• Main facilities

Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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• DVM-system. Goals and structure

... 9 container is iterable collection of items. 10 item is object getting markup data (new attribute). 11 . ... 32 def __init__ ( self , name , container , map_out = {}): . ... 40 def set_map_out ( self , map_out ): . ... 44 def set_map_in ( self , map_in ): . ... 54 def __getitem__ ( self , item ): . ... 65 def __contains__ ( self , item ): . ... 88 def from_string ( cls , string , name , container , map_out = {}): . ... 94 self = cls ( name , container , map_out ) . ... 103 def items ( self ): . ...

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• allpy: 835efa2a8c71 allpy/markup.py
• allpy: aef51fc30dcd allpy/markup.py
• allpy: 2c0391cca127 allpy/markups.py

... Internal declaration of zend_module_entry . typedef struct _ zend _ module _entry zend _ module _entry; struct _ zend _ module _entry { unsigned short size; unsigned int zend _api; unsigned char zend _debug; unsigned char zts; char * name ; zend _ function _entry * functions ; int (* module _startup_func)(INIT_FUNC_ARGS); int (* module _ shutdown _func)( SHUTDOWN _FUNC_ARGS); int (*request_startup_func)(INIT_FUNC_ARGS); int (*request_ shutdown _func)( ... functions . ... module_shutdown_func . ...

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• xml_parse_into_struct
• udm_cat_list
• serialize

Электронная библиотека Попечительского совета . ... Sherrod A. - Data structures and algorithms for game developers . ... Data Structures and Algorithms for Game Developers teaches the fundamentals of the data structures and algorithms used in game development. ... It teaches new game programmers, students, and aspiring game developers how to create data structures and write algorithms using C++. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Leyton M. - A Generative Theory Of Shape :: Электронная библиотека
• Weiss M.A. - Algorithms, data structures, and problem solving with C++ ::
• Drechsler R., Eggersgl?? S., Fey G. - Test Pattern generation using boolean

... Sinergetic has recommended itself in the most various areas: to physics, chemistry, biology, and even in public sciences. ... The purpose of research was the study of laws of heat transfer process in active environment, which is nonequilibrium and itself can give the contribution to change of temperature. ...

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Next: Subtyping Up: Untyped values Previous: Untyped values . ... 1: // IDL 2: struct foo { 3: long l; 4: short s; 5: }; 6: 7: // C++ 8: void operator<<= ( CORBA::Any &a, const foo &s ) 9: { 10: a.type( _tc_foo ); 11: a.struct_put_begin(); 12: a <<= s.l; 13: a <<= s.s; 14: a.struct_put_end(); 15: } 16: 17: CORBA::Boolean operator>>=( const CORBA::Any &a, foo &s ) 18: { 19: return a.struct_get_begin() && 20: (a >>= s.l) && 21: (a >>= s.s) && 22: a.struct_get_end(); 23: } . ...

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• LICENSE
• Qt Collection Classes
• IDL Compiler

A program for alignment of structures of DNA-protein complexes . ... Help . ... StructAlign is a program for alignment of DNA-protein complexes' structures. The program gets a pair of complexes of DNA double helix with proteins in PDB-format and optionaly names of protein chains and outputs an alignment of DNA chains corresponding to the best spatial fit of protein chains also in PDB-format. ... X-axis is directed from P atom to C1' atom. ...

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• ConClus
• Align tool for DNA-protein complexes
• About

Annotation of diploma "Fiber-based visualization of biomarkers by Raman scattering and optical harmonic generation" The use of multicore fiber-optic probes for different methods of high spatial and temporal resolution visualization is shown. multicore fiber-optic setup was developed and applied for delivering the pump radiation and Raman signal, that allowed us to visualize the spatial distribution of Raman active resonances of matter. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2015/Lipatov_Magnitskiy_en.pdf
• Laboratory of solid-state lasers and coherent spectroscopy
• Публикация

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank
• INTAS :: Global and Local Protein Matching
• DIMACS Series in Discrete Mathematics

... M.V.Lomonosov Moscow State University . ... Research Centers . ... Research . ... Collaborative research of physicists from Moscow State University and engineers and medical doctors from the University of Washington led to the development of a new method of treatment of urolithiasis using intense ultrasound bursts. ... SWL is a noninvasive procedure where shock waves are focused into the body and onto the stone, shattering it into small fragments that the patient will pass spontaneously. ...

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