Protein docking algorithm based on structural homology with protein-protein interfaces T. Kirys, A.V. Tuzikov United Institute of Informatics Problems, National Academy of Sciences of Belarus, Surganova, 6, Minsk, tuzikov@newman.bas-net.by An original protein docking algorithm based on structural similarity with experimentally determined protein-protein interfaces is proposed. ... The alignment is performed by dynamic programming on distance matrices of protein and interface. ...
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Ссылки http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf -- 194.1 Кб -- 19.03.2013 Похожие документы
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The Octotron Approach: Towards Autonomous and Reliable Operation of Supercomputers Alexander Antonov, Dmitry Nikitenko, Pavel Shvets, Sergey Sobolev, Konstantin Stefanov, Vadim Voevodin, Vladimir Voevodin, Sergey Zhumatiy Research Computing Center, Lomonosov Moscow State University, Moscow, Russia {asa,dan,shpavel,sergeys,cstef,vadim,voevodin,serg}@parallel.ru 1 Introduction ... 2 The Octotron System: Model-based Approach Octotron represents the supercomputer model in the form of a graph (Fig. ...
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Ссылки http://hpc.msu.ru/files/HPC/ISC_2015_Posters_attachment_14.pdf -- 156.6 Кб -- 07.07.2015 Похожие документы
... The software models the dynamics of RNA secondary structure by the means of kinetic analysis of folding transitions of a growing RNA molecule. The result of the modeling is a kinetic ensemble, i.e. a collection of RNA structures that are endowed with probabilities, which depend on time. ... 19, Moscow, 127994, Russia. ... Danilova, L.V., Pervouchine, D.D., Favorov, A.V., Mironov, A.A. (2006) RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA. ...