... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite
• Site Cluster

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank
• IGLA-3D User Guide
• Bioinformatics portal, Moscow State University

Электронная библиотека Попечительского совета . ... Burdick Ch.L., Ellis J.H. - The Crystal Structure of Chalcopyrite Determined by X Rays . ... Название: The Crystal Structure of Chalcopyrite Determined by X Rays . Авторы: Burdick Ch.L., Ellis J.H. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Jensen K.V. - The Ni-YSZ interface. Structure, composition and electrochemical
• Kalos M.H., Percus J.K., Rao M. - Structure of a Liquid-Vapor Interface ::
• Billinge S.J.L., Thorpe M.F. - Local structure from diffraction :: Электронная

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Work notes

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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• NPIDB: 5DPK structure

Schedule : Nonlinearity of Media and Structures, Nonlinear Testing . ... Guyer R. (invited) . ... Esipov I. B. Nonlinear Sound Wave Propagation in 2-D Hysteretic Medium . ... Berndt T. P. Simultaneous Probing of the Nonlinear Effect of a Plane Unbonded Interface on Incident Longitudinal and Shear Acoustic Waves as a Function of Amplitude and Pressure . ... R. E. (invited) . ... Korobov A. I. Influence of Internal Structure of Polycrystalline Copper on Its Nonlinear Elastic and Acoustic Properties . ...

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• Abstract
• Nonlinearity of Media and Structures, Nonlinear Testing

... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• ETS_water_bridges
• SDP home page
• ETS_hydrophobic_interactions

RNA Tertiary Structure Modelling . ... Two steps to fold coarse-grained model of RNA tertiary structure . ... fill in RNA secondary structure form with CT format (also with pseudoknots); . ... push "Finish Step #1" button to obtain secondary and intermediate* structures. * intermediate structure is the structure with minimum of "free energy" contains formed helixes and stacking, but without tertiary interactions . RNA secondary structure form . ... some useful RNA secondary structure databases: . ...

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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus
• StructAlign help
• Nhunt: program for nucleic acid sequence similarity search

GiST home | Introduction | ... GiST is a height-balanced tree structure with tree nodes containing (p, ptr) pairs, where p is a predicate ( attribute ),which is used as a search key, and ptr is the pointer to data for a leaf node or a pointer to another tree node for a non-leaf node. ... Every node contains between min and max index entries unless it is the root . ... For each index entry (p, ptr) in a non-leaf node, p is true when instantiated with the values of any tuple reachable from ptr . ...

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• SAL- Programming - Tools & Utilities - C Interfaces and Implementations
• SAL- Computer Graphics, Images Signals - Misc - Boost Graph Library
• SAL- Computer Graphics, Images Signals - Misc - GGCL

Forming of landscape structure on south of Valday Hill M.Yu. ... Landscape components reflected through spatial variation of numerous properties, determined on digital elevation model (made with topographic map 1:100000), composition of multispectral images Landsat 5, Landsat 7, Geocover (1990 and 2000) and gridded maps of climatic variables with 10 arc minute resolution. ... Each landscape component has properties independent from the whole and determining its autonomous variation. ...

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• http://www.sevin.ru/ecosys_services/references/Kozlov_Structure_of_southern_taiga_landscape.pdf
• Laboratories: Laboratory for Ecology and Morphology of Marine Invertebrates:
• Laboratories: Laboratory for Ecology of Lower Vertebrates: Goals and Tasks

... Class . ... Provides an abstraction for multidimensional array access, some concrete implementations, and ways to view a MultiArray as if it had a different structure. ... This interface defines the services required by MultiArrayProxy to manipulate indexes and the dimensions of a MultiArray. ... In the following, we use the unadorned term "array" to mean the Java language construct, and the term "multidimensional array" for the mathematical abstraction modeled by the MultiArray class in this...

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• : API Help
• API Help

Enclosure structures of equal level line fields in the gradient filling problem" . Ivanov B.N. In this paper, the method of gradient filling of equal level line fields by color scale is considered. ... The root tree structure of equal level line enclosure is applied to the context analysis of all equal level line values in order to correctly specify the color values of their filling. A working algorithm of gradient filling of equal level lines is given. PostScript (in Russian) (2.67MB) . ...

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• "TIM-parallelization in a shared memory model using OpenMP interface"
• "Modeling of interaction between a moving structure and a fluid flow using
• "Shockwave structures in real gases: transition between shock interactions of

... They in fact form surfaces that can be treated as interfaces between polar aqueous solutions and non-polar environment of phospholipidic side chains. ... That's why our idea was to study the behaviour of amino acid residues, as monomer units of proteins, in an interfacial system. Objective By means of molecular dynamics simulations we intended to study the properties of amino acid residues in a system containing liquid-liquid interface between water and hexane, which we took as a non-polar phase. ...

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• Polymer Macromolecules at Surfaces, Polymer Interfaces (theory + computer
• K3Nb3B2O12 FAMILY

The database of RNA secondary structure elements E.F. Baulin, Institute of Mathematical Problems in Biology, Pushchino, Russia, Higher Schoo l of Economics, Moscow, Russia ... Russia, Higher Schoo l of Economics, Moscow, Russia, mroytberg@lpm.org.ru We propose a new definition of the loop, which on the one hand is a generalization of the definition of Mathews-Turner [1], and on the other hand allows to divide into loops an arbitrary secondary ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/126.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/134.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf

... 7 (495) 939-16-82 info@physics.msu.ru . ... Japan), and Univ. of Oulu (Finland) demonstrated that a power-law size distribution with large-size cutoff, as observed in Saturn's rings, is universal for systems where a balance between aggregation and disruptive collisions is steadily sustained. ... We show that a power-law size distribution with large-size cutoff, as observed in Saturn's rings, is universal for systems where a balance between aggregation and disruptive collisions is steadily sustained....

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• Как получить копию лицензионного пакета LabView для использования в
• Обеспечение учебного и научного процессов на факультете лицензионным

... Structure and crystal chemistry analysis of (4 E )- and (4 Z )-6,6',7,7'-tetrahydro-5H,5'H-4,4'-bi-1-benzothiophene . Abstract By means of X-ray crystallography the structures of (4 E )-6,6',7,7'-tetrahydro-5H,5'H-4,4'-bi-1-benzothiophene and (4 Z )-6,6',7,7'-tetrahydro-5H,5'H-4,4'-bi-1-benzothiophene were determined. ... Moscow University Chemistry Bulletin . 2009, Vol. ... Copyright (C) Chemistry Dept., ... Copyright (C) Chemisty Department of Moscow State University . ...

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• Structure and Interaction Energies of the Ar...Cl2 Complex. Application of the
• Structure of the Chemistry Department of Moscow State University
• LABORATORY OF PHOTOCHEMISTRY

... Experimental and theoretical study of structure and evolution of hadrons under extreme conditions at high energies . ... Physics of the solar wind, interplanetary magnetic field and solar-terrestrial relations . ... Neutron diffraction researches of nuclear and magnetic structure of new materials and its correlations with physical properties . ... Research of fractal structure of aluminosilicates gels by a method of small angle scattering of neutrons and synchrotrons radiations . ...

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... Next: DSP board program Up: SPM Installation Previous: Mechanical system of the Contents Index . Figure 1.3: Software structure. The server part of the software is working under Windows NT or XP operating systems. ... Second level - operating system driver, that allow to exchange data with DSP board through input/output ports. ... This structure is a result of qualities this system should satisfy: precise process synchronization, hi-speed data transfer, network support, convenience in usage. ...

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