PAL2NAL output ERROR: if "codon(Output format)" is selected, don't use "Remove gaps, inframe stop codons" or "Remove mismatches" or "Use only selected positions". Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package: KS = 2.2360 KA = 0.2265 KA/KS = 0.1013 You can see the parameters used in codeml to calculate these values. If you use these values, please cite the following peper: Goldman, N. and Yang, Z. 1994. ...

Еще в разделе: (Показать все результаты (>6558) - kodomo.fbb.msu.ru/ )

• allpy: e4b269ba4f5f lib/project.py
• allpy: log
• allpy: 1785e40b2a2d allpy/dna.py

... Vestnik Moskovskogo Universiteta. Seriya 1. Matematika. Mekhanika. ...

Еще в разделе: (Показать все результаты (>119) - vestnik.math.msu.su/ )

• Vestnik Moskovskogo Universiteta. Seriya 1. Matematika. Mekhanika

... GOTO 100 0038 IF(ALFA.EQ.0.) ... EPS)GOTO 2 0054 IF(ALFA.EQ.0.) ... GOTO 68 0075 K2=K2+1 0076 IF(K2.EQ.IMAX) GOTO 67 0077 X0=Y 0078 F0= AN4 0079 GOTO 23 0080 37 CONTINUE C * changing the interval 0081 X=Y 0082 F= AN4 0083 GOTO 23 0084 ENTRY PTIPRE C * entry to continue calculations 0085 ICONT=1 0086 GOTO 110 0087 64 CONTINUE C * working array is too short 0088 IERR =64 0089 GOTO 9999 0090 65 CONTINUE C * initial regularization parameter is too small 0091 IERR =65 0092 ...

Еще в разделе: (Показать все результаты (>32) - foroff.phys.msu.ru/ )

... Let the control system be given by the equation dx = X (x, u) = X, u U, dt where X is a vector field on the configuration space M , x M , u is the control parameter, U is the set of admissible values of u. With the vector field X we canonically associate a scalar-valued fiberwise linear function HX on the cotangent bundle T M , HX ( , u) = , X ( , u) , T M , u U, where : T M - M is the canonical pro jection. ...

Еще в разделе: (Показать все результаты (>26) - pont2008.cmc.msu.ru/ )

• http://pont2008.cs.msu.ru/files/en/abstracts/Krener.pdf
• http://pont2008.cs.msu.ru/files/en/abstracts/Agrachev.pdf

PETROTYP has been designed for clustering igneous rock compositions given as concentrations of major element oxides. This program is based on principles of hierarchical grouping of objects that are characterized by an array of parameters described as an objective function (Ward, 1963). The major principle involves a subsequent combining of samples having the minimum geochemical distance (GD) with respect to other rocks or average cluster compositions formed at a previous stage. ...

Еще в разделе: (Показать все результаты (>432) - geo.web.ru/ )

• Trusov Sergey's homepage The influence of boundary layer effects on the melt
• Dictionary_L
• Seismic tomography of central Eurasia

... Котин В.В., Ершов Ю. А. (Москва) . ... Модифицированный вариант открытой экотоксикологической модели [1,2] позволяет исследовать динамику популяций под влиянием импульсного воздействия токсикантов. ... Система 'популяция-токсикант' описывается на макроуровне как открытая неавтономная динамическая система, эволюционирующая в медленном времени [3,5]. ... Ершов Ю.А., Котин В.В. Журнал физической химии, 2000 , т. 7 4 , ? ... Ершов Ю.А., Котин В.В. Научная сессия МИФИ-2000. ... М., МИФИ, 2000, с.117-118....

Еще в разделе: (Показать все результаты (>45) - www.library.biophys.msu.ru/ )

... Class . ... public class Schema . ... This is a set of ProtoVariable, the DimensionSet which is the union of the Dimensions used, and any global Attributes. ... contains (java.lang.String name) . ... Returns the set of attributes associated with this, also know as the "global" attributes. ... a new Array containing the elements of this set. public ProtoVariable get (java.lang.String name) . ... If a different ProtoVariable with the same name, was in the set, it is returned, otherwise null is...

Еще в разделе: (Показать все результаты (>54) - angel.cs.msu.su/ )

• FileUtils
• : Class ConcreteIndexMap
• : Class AbstractNetcdf

Chlorophyll Fluorescence in vivo : A Theory (Part II). ... The model of carbon assimilation V c ( m M C m -3 s -1 ) by phytoplankton is based on light dependence of photosynthesis , which can be described by a coefficient of underwater radiation absorption by photosynthetic pigments of photosystem II in suspension of microalga a PSP (m -1 ) averaged over the spectral range of underwater radiation, where ... According this assumption the photosynthesis rate is equal to: . ...

Еще в разделе: (Показать все результаты (>13) - www.biophys.msu.ru/ )

• Technical Specifications
• MEASURING THE PHYTOPLANKTON PHOTOSYNTHESIS RATE USING A PUMP-AND-PROBE

... Москва, МГУ, 2012. ... Захаров В.С., Исаев В.А. Доклад на четвертой международной научной конференции молодых ученых и талантливых студентов Учреждения Российской академии наук Института водных проблем РАН; Москва, 6 - 8 декабря 2010 г. Статья 2009 . ... Статья 2008 . ... Захаров В.С. Стендовый доклад на XLI тектоническом совещании, Москва, 2008 г. Статья в формате djvu . ... Захаров В.С., Савчук О.В. Стендовый доклад на XLI тектоническом совещании, Москва, 2008 г. Статья в формате djvu . ... Статья...

Еще в разделе: (Показать все результаты (>32) - dynamo.geol.msu.ru/ )

• Summaries of articles
• V.Zakharov's Ph.D. thesis

DESY, FLASH and XFEL XFEL XFEL versus FLASH XFEL versus LCLS and SPring8 Two-colour short- pulse photoionization of atoms Infrared (IR) laser pulse : = 1.66 eV ( 800 nm), TL = 2.5 fs I = 10 12 ­ 10 14 W/cm 2 XUV pulse = 70 ­ 130 eV The main parameters: L - duration of the IR pulse XUV - duration of the XUV pulse TL - period of the IR ...

Еще в разделе: (Показать все результаты (>197) - nuclphys.sinp.msu.ru/ )

• http://nuclphys.sinp.msu.ru/school/s09/09_06.pdf
• The European X- Ray Free-Electron Laser

'mpif.h' * Именованные константы - параметры задачи INTEGER DLEN_, IA, JA, IB, JB, M, N, MB, NB, RSRC, $ CSRC, MXLLDA, MXLLDB, NRHS , NBRHS, NOUT , $ MXLOCR, MXLOCC, MXRHSC PARAMETER ( DLEN_ = 9, IA = 1, JA = 1, IB = 1, JB = 1, $ M = 9, N = 9, MB = 2, NB = 2, RSRC = 0, $ CSRC = 0, MXLLDA = 5, MXLLDB = 5, NRHS = 1, $ NBRHS = 1, NOUT = 6, MXLOCR = 5, MXLOCC = 4, $ MXRHSC = 1 ) DOUBLE PRECISION ONE PARAMETER ( ONE = 1.0D+0 ) * * Локальные переменные INTEGER ICTXT , ...

Еще в разделе: (Показать все результаты (>186) - num-anal.srcc.msu.ru/ )

• http://num-anal.srcc.msu.su/meth_mat/parl_prg/pr2_3.htm
• Конвертер с Фортрана на Паскаль

... Structure of Data . ... Catalog . ... Catalog: 206 clusters 32 clusters: known before 12 clusters: parameters from BVRI photometry @ SAO 1-m 0 clusters: parameters from UBVRI photometry @ Maidanak 1.5-m 26 clusters: parameters from 2MASS 168 clusters: new (2MASS) 142 clusters: parameters from 2MASS 26 clusters: embedded 0 clusters: parameters from BVRI photometry @ SAO 1-m 3 clusters: parameters from UBVI photometry @ ARIES 1.04-m 0 clusters: parameters from UBVRI photometry @ Maidanak 1.5-m . ...

Еще в разделе: (Показать все результаты (>4) - ocl.sai.msu.ru/ )

• SAI Open Star Clusters (SAI OCL) Catalog

... For the past years I have been working on the problem of synthesis of light curves of close binary systems, consisting of a normal star and a compact object (point object with fixed X-ray luminosity). ... Possible existence of a bright spot on the disk's lateral surface is taken into account. ... The last of then will be published in Gordon and Breach Publishers ( Cherepashchuk A.M., Katysheva N.A., Khruzina T.S., Shugarov S.Yu. ... Cherepashchuk A.M., Katysheva N.A., Khruzina T.S., Shugarov S.Yu. ...

Еще в разделе: (Показать все результаты (>16) - uranus.sai.msu.ru/ )

The purpose of the space-physics lab exercises is to introduce the students to the methods of the measurements, to the modern conception of near-Earth space structure and the physical processes and phenomena occured in it. ... At present the reasearches and the teachers of the University and of other institutes participating in the project continue development of the the special space-physics lab exercises, and they are interested in your ideas concerning the future exercises. ...

Еще в разделе: (Показать все результаты (>32) - cosmos.msu.ru/ )

• University Satellites and Space Science Education '2006

... L Сd , Pol a nd ABOUT EFFECTIVE MODES METHOD FOR DESCRIPTION OF INTERNAL DYNAMICS OF WEAKLY BOUND CLUSTERS Elena Belega, Evgeny Cheremukhin 1 , Dmitry Trubnikov Abstract: New approach to describe the internal dynamics of weakly bound clusters is presented. ... It is found that the number of active collective modes depends on the initial cluster excitation and that the internal energy is partitioned nonuniformly among the modes. ... Collective motion of oxygen atoms performs mostly in plane. ...

Еще в разделе: (Показать все результаты (>23) - beams.chem.msu.ru/ )

... Anis_1L - software for uniform anisotropic halfspace to calculate ARS diagrams for several arrays (AM (U), AMN (E), dipole equatorial (D), T-array (which is equivalent to dipole equatorial (D), but has only one current electrode), etc.), when source of current is on the earth surface or at a depth. ... AnisCont program calculates the azimuthal diagrams for anisotropic and inhomogeneous model - vertical contact of two anisotropic media with any parameters of an anisotropy for several arrays. ...

Еще в разделе: (Показать все результаты (>62) - geophys.geol.msu.ru/ )

• IPI_MTS - 1D interpretation of MTS and FS (freeware).

Кафедра ТЕОРИИ ВЕРОЯТНОСТЕЙ БОЛЬШОЙ СЕМИНАР КАФЕДРЫ ТЕОРИИ ВЕРОЯТНОСТЕЙ (руководитель - член-корр. РАН, профессор А.Н. Ширяев) February 9 - An approach to calculating the variance of Pitman estimators Alexander Novikov (University of Technology, Sydney) Nino Kordzakhia (Macquarie University, Sydney) We provide an analytic formula for the variance of the Pitman estimator for a location parameter of independent observations and also some change- point estimators. ...

Еще в разделе: (Показать все результаты (>52) - new.math.msu.su/ )

• Andrei Vladimirovich Fursikov | Department: General Problems of Control.
• Scientific directions | Department: General Problems of Control. Faculty of

NAME httpd - Apache hypertext transfer protocol server SYNOPSIS httpd [ - X ] [ - R libexecdir ] [ - d serverroot ] [ - f config ] [ - C directive ] [ - c directive ] [ - D parameter ] httpd [ - h ] [ - l ] [ - L ] [ - v ] [ - V ] [ - S ] [ - t ] [ - T ] DESCRIPTION httpd is the Apache HyperText Transfer Protocol (HTTP) server program. ... This manual page only lists the command line arguments. ... Paths in this manual may not reflect those compiled into httpd. ... The default is /usr/local/apache . ...

Еще в разделе: (Показать все результаты (>48) - neptun.sai.msu.ru/ )

• Running a High-Performance Web Server for BSD

A GENETIC ALGORHYTM FOR OPTIMIZING A NEURAL NETWORK CAPABLE TO LEARN FOR FOOD SEARCHING IN A RADIAL MAZE Budilova E.V., Chepurnova N.E., Chepurnov S.A, Teriokhin A.T. M.V.Lomonosov Moscow State University, Dept. of Biology. ... The upper platform has a hole in the middle and several radially directed tubular canals ("arms") each of which can contain a peace of food and has doors opening only in the centrifugal direction. ... The task of the animal is to visit only those arms which contain food. ...

Еще в разделе: (Показать все результаты (>38) - ecology.genebee.msu.ru/ )

• http://ecology.genebee.msu.ru/3_SOTR/CV_Terekhin_publ/2000_Longev_JEvolBio.pdf

. SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins .

Еще в разделе: (Показать все результаты (>5450) - monkey.belozersky.msu.ru/ )

• HF clusters: algorithm
• Hydrophobic clusters
• Inquiry information || Distances