... Why do I see a string of "X"s (or "N"s) in my query sequence that I did not put there? ... BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. ... Filters are used to remove low-complexity sequence because it can cause artifactual hits (please see Q: After running a search why do I see a string of "X"s (or "N"s) in my query sequence that I did not put there? ...

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• RNA secondary structure prediction
• Notes on searching by similarity
• OUTPUT

... Voronov, Vasiliy. Scalability and efficiency of parallel power grid simulations on massively-parallel platforms (submitted). ... 2009. ... Voronov, Vasiliy and Popova, Nina. ... Conference proceedings 2010. ... Abstract Book of SIAM Conference on Parallel Processing for Scientific Computing (SIAM PP10). ... Proceedings of the International Conference on Parallel Computing (ParCo-2009). ... IEEE Computer Press. ... Pozdneev, Alexander and Popova, Nina and Voronov, Vasiliy. ...

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... Input parameters Key parameters: - sqrt(s), GeV N events ­ total number of events A number of target/projectile B min, B max ­ impact parameters (in fm) for all events Choice of parton-hadron conversion scenario (AMPT model, AMPT with string and others) Parameters for Lund fragmentation Quenching flag (on\off) K short decay flag, other flags Output parameters Output file: ampt.dat, containts: Event number Impact parmeter Total number of participants n. in proj. ...

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• http://lav01.sinp.msu.ru/~vlk/pp_coll_ppt_16May_report.pdf

... This article caused a most lively interest from the readers, and received more than a hundred responses, which contained various versions of construction methods of the Sri Yantra. ... In this way he revealed a good correspondence between the concentric levels built by him in this relationship of the three Sri Yantra and the orbits of the planets of the solar system (Fig. 10, shows the first two out of three stars examined by him) with a divergence from the real diameters of orbits of about 1.5%. ...

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• http://www.protein.bio.msu.ru/~akula/coherence.pdf

and 42 % 27-11-1999 Andr\'as Holl % 2.31: 02-05-2001 % % Konkoly Observatory, Budapest, Hungary % Use the following documentstyle definition : % \documentstyle[twoside, ibvs2, epsf]{article} % or % \documentstyle[twoside]{article} % \input ibvs2.sty % \input epsf.sty % epsf is only needed for figures % IBVS.STY screen message \ typeout {} \ typeout {IBVS.STY Ver. 2.31 - 02-05-2001 } \ typeout {Information Bulletin on Variable Stars - Konkoly Observatory} \ ...

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• http://www.sai.msu.ru/dept/adm/lamzin/aa1179.pdf

... High Brightness RTM . ... Fig.1a: 70-MeV pulsed race-track microtron . Many applications require compact, inexpensive and efficient source of electron beam in energy range 10-100 MeV. ... Beam is focused by accelerating structure, which acts as RF quadrupole singlet, quadrupole triplets (12) installed at the even orbits return path and by electromagnet quadrupole singlet (9) installed at common axis. ... Fig.1b: 70-MeV RTM Schematic . ... Energy gain: 4.8 MeV / orbit . Orbits: 14 . ...

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... OPLS-AA topology generation is a very complex task because of huge amount of the atomtypes described this force field. ... TPPMKOP is an utility developed for the automatic topology generation working well with OPLS-AA force field. ... This database is continually upgrading by our research group. ... OPLS-AA patch for different types of molecules ERG Research Group: Лаборатория теоретической биофизики написал (Февраль 8th, 2016 4:27 дп) . ... All-atom automatic OPLS-AA topology generator . ...

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• Using RESP with GAMESS-US and Firefly (PC-GAMESS) ERG Research Group:
• Constructing discrete Laplacian via sparse matrix ERG Research Group:
• gromacs ERG Research Group: Лаборатория теоретической биофизики

... 10, 63 ­ 64 (2010) / DOI 10.1002/pamm.201010024 Integrability and nonintegrability in terms of transcendental functions in dynamics of a rigid body Maxim V. Shamolin1, 1 Institute of Mechanics, Lomonosov Moscow State University, Michurinskii Ave., ... This circumstance allowed the author to perform a complete analysis of all phase trajectories and highlight those properties of them which exhibit the roughness and preserve for systems of a more general form. c 2010 Wiley-VCH Verlag GmbH & Co. ...

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• http://shamolin2.imec.msu.ru/art-133-1.pdf
• http://shamolin2.imec.msu.ru/art-112.pdf
• http://shamolin2.imec.msu.ru/art-98-1.pdf

... Manuscripts submitted to the journal should be divided into the following sections: Title page, Abstract (in Russian and English), Key words (in Russian and English), main manuscript text, list of references, tables, figures and figure captions. ... Full size of the article includes list of references, tables and figures. ... Rich text format (*.rtf) . ... References are given in the text in square brackets; full references are given at the end of the manuscript in the section List of references. ...

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• http://www.antropos.msu.ru/vestnic/rukop_eng.doc

... Mathematical models and methods in VLSI design . ... General models and statements about the complexity of combinatorial tasks, methods for development of fast algorithms (method of dynamic programming, ?divide and conquer?, ?method of model extension?) are considered. ... Mathematical models of contemporary electronic circuits are considered and basic approaches to solving task of logic synthesis, as well as tasks of VLSI modules placement and interconnection routing are described. ...

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• Master Education | Магистерское и послевузовское образование Entrance

Another mechanical model of parametrically excited pendulum and stabilization of its inverted equilibrium position Anton O. Belyakov 1 Lomonosov Moscow State University 2 Vienna University of Technology 8th European Nonlinear Dynamics Conference (ENOC 2014) Vienna, July 7, 2014 Scheme of a parametric pendulum y O l (t ) - g m 2 r1 + m 2 Equations of motion mr 2 1 d d2 + c1 + m g l (t ) sin () = 0 dt 2 dt (1) Dimensionless equation Three dimensionless parameters and ...

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• Anton O. Belyakov

... The nonlinearity has the form of a sigmoid function of two parameters a and b. The zoning of the plane (b; a) with respect to the number and type of stationary states (critical points) for the model under consideration is performed. ... The function g(u) (called a shot function) is expressed by g(u; a; b) = 1 1 + a exp(\Gammabu) (2) where the parameters a and b are positive. ... Analysis of critical points. ... The center­type stable critical points correspond to a minimum of the function U (u) [3]....

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• http://num-anal.srcc.msu.su/meth_mat/parl_prg/pr2_2.htm
• PAR_SYEV1. Программа вычисления пaраметров для подпрограмм вычисления
• PAR_GESVD1. Программа вычисления пaраметров для подпрограмм вычисления

... Faculty of Physics . ... Online journals . ... Access to the E-library is open from any computer in the intranet of the Faculty connected to the Internet. ... URL link: http://www.iop.org/EJ/ These journals can be accessed on-line from any computer in the intranet connected to the Internet. ... URL link: http://www.elsevier.com/wps/find/journal_browse.cws_home/P12?pseudotype= =Title 1Code=P12 =A These journals can be accessed on-line from any computer in the intranet connected to the Internet. ...

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... 2 1 2 (2008) 5­9 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/ecolmodel The impact of different density stresses on the dynamics of two competitive populations Anatoly T. Teriokhin , Elena V. Budilova Department of Biology, Moscow Lomonosov State University, Moscow 119992, Russia article Article history: info abstract We compare the asymptotic dynamics of two competitive populations described by a ... Second, only the density of youngs can be reduced. ...

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• http://ecology.genebee.msu.ru/3_SOTR/CV_Terekhin_publ/2003_Envir_human_EER.pdf
• http://ecology.genebee.msu.ru/3_SOTR/CV_Terekhin_publ/2000_Longev_JEvolBio.pdf

Lomonosov Moscow State University . ... Divisions and Departments . ... Authors include eminent Russian and foreign scholars, associate professors, professors of the Faculty of Foreign Languages and Area Studies, young scholars, postgraduates and students close to graduation. ... Journals'. ... S.G. Ter-Minasova (editor-in-chief ) - PhD (Doctor of Philology), professor, President of the Faculty of Foreign Languages and Area Studies, Head of the Department of the Theory of Foreign Language Teaching. ...

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V.A. Morozov . Regularization Methods for Ill-Posed Problems . ... This monograph presents the theory and methods of approximate solutions of basic classes of ill-posed problems. It develops an abstract approach that is characterized by the following: widespread use of methods of functional analysis; concentration on general necessory and sufficient conditions of solvability and unique solvability of corresponding problems. The basic methods discussed is the methods of psendosolutions. ...

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• V.V.Pipin, D.D.Sokoloff, I.G. Usoskin, Variations of the solar cycle profile in
• Lebedeva O. S. Tensor conjugate-gradient-type method for Rayleigh quotient
• Haiqing Xu, Yu Gao, Hongqi Zhang, Takashi Sakurai, Masaoki Hagino, D. Sokoloff,

... Many presentations concern interesting work, but are nevertheless difficult to follow because the speaker unknowingly makes a number of presentation errors. ... Time 1 Conclusion Audience Attention Introduction Various Themes Efficient Presentation Intermediate Conclusion Intermediate Conclusion Average Presentation Figure 2 Ideal attention curve of an audience when the speaker divides his talk in recognizable parts, each summarized by intermediate conclusions. ... What is a successful poster? ...

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VENUE IMPORTANT DATES Paper Submission Deadline Notification of Acceptance Beginning of Early-Bird Registration February 17, 2012 April 13, 2012 April 13, 2012 April 30, 2012 Early Bird Registration Deadline Registration Deadline for Inclusion in the Program Announcement of the Final Conference Program Conference Dates May 25, 2012 June 8, 2012 July 1-6, 2012 The Roles of Context, Culture and Representations in Physics Teaching & Learning It is the only city which bridges two geographic continents.. ...

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• http://foroff.phys.msu.ru/eng/docs/En_cont_last1.doc
• Глубокоуважаемые коллеги
• Postdoctoral training (Cosmic Rays and Physics of Space)

... Results of experimental and numerical investigations of a permeable round parachute with the stripe-stabilizer, the so called "SAL" parachute - Stabilization of Aerodynamic Loads, are given [1]. ... The parachute canopy attained different shapes from each other depending on the value of reefing ( Fig.1 ). ... As given below some numerical investigations of the stripe-stabilizer reefing influence on the canopy shape, its aerodynamic drag and the tension of radial ribbons are considered. ...

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• Scientific Achievements
• On Square Parachute Differential Equations
• Education

Title Author Key words Socio-political activism: criticism and dissidence Dobren'kov V.I., Kravchenko A. I. academic sociology, academic neutrality, socio-political activism This article argues that sociology demonstrates special socio-political position to its followers. This position is associated with civic attitude and regular participation in public life. This position can be called social and political activism. Abstract

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• Вестник МГУ