... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Algorithm
• SDPpred
• SDPlight

... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• About this project
• SDP home page

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus

... HELP ON SCREENING OF PATTERN OR ALIGNMENT AGAINST PROTEIN PROTEIN . ... The method of looking for all pattern entries (possibly inexact) in PROTEIN databank is almost the same as in PROSITE screening procedure. ... The screening by query alignment, based on the same principle: the alignment is seen as a pattern defining letter's frequencies in every position. The pattern example: . ... the only one capital letter at a position means that only given residue should be at the position. ...

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• RNA secondary structure prediction
• Biochemistry (Moscow), Vol

... Полная версия этой страницы: Ph.D and Post-Doc positions in chemical engineering . Студенческий форум Физфака МГУ > Физфак и учеба > Аспирантура . ... Ph.D. position: . ... We have several ongoing research projects funded with openings for motivated students interested in pursuing a Ph.D. Research focuses on the molecular modeling of polymeric materials, including both synthetic polymers and biological networks, such as actin filaments, intermediate filaments, microtubules and collagen. ...

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• Ph.D and Post-Doc positions in chemical engineering - Студенческий форум
• Студенческий форум Физфака МГУ > PhD positions in Switzerland
• PhD positions in Switzerland - Студенческий форум Физфака МГУ

... This example illustrates the use of external files as the source for a layer. This example creates a web page for Nikki's Diner, which is a vegan restaurant that offers tasty daily specials. The web page contains some general information about the diner, and then offers a pop-up menu that lists the days of the week. ... These files contain HTML formatted text that describes the specials for that day. ... LAYER ID="menu" LEFT=50 WIDTH=400 src="specials/sat.htm"> </LAYER> . ...

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• Long description for example illustrating positioning with respect to a
• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating absolute positioning

... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: b2ec17578145 lib/block.py
• allpy: 6dfc736f37a9 lib/block.py
• allpy: f6db5f284ee3 lib/block.py

... Submitochondrial fragments of brain mitochondria: general characteristics and catalytic properties of NADH:ubiquinone oxidoreductase (complex I). ... A number of genetic or drug-induced pathophysiological disorders, particularly neurodegenerative diseases, have been reported to correlate with catalytic impairments of NADH:ubiquinone oxidoreductase (mitochondrial complex I). ...

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• Oligomeric adiponectin forms and their complexes in the blood of healthy donors
• Biochemistry Department of Moscow State University | Mechanism of mitochondria
• Heterooligomeric complexes of human small heat shock proteins.

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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• NPIDB: List of complexes

... Ярмарка вакансий и стажировок для студентов и выпускников вузов . ... University of Groningen, The Netherlands . PhD Position available . ... PhD Position in Theoretical Chemistry . ... She is considered to be one of top 5 universities in Europe for research in Materials Science, Chemistry, Space Science, Microbiology, and Environment/Ecology. ... In 1993, the MSCplus was accredited by the Royal Netherlands Academy of Arts and Sciences (KNAW) as a leading Research School in Materials Science. ...

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• A Ph.D. position, 2006, Finland / Вакансии / Physcareer.ru
• Office Manager (temporary position 09.07.07-23.07.07 / Вакансии / Physcareer.ru

О лаборатории . ... Лаборатория теоретической биофизики . ... OPLS-AA topology generation is a very complex task because of huge amount of the atomtypes described this force field. ... We use OPLS-AA with some includings; ?includings? are overlays on the standart GROMACS forcefield files. ... All-atom automatic OPLS-AA topology generator . ... comcon1 in All-atom automatic OPLS-AA topology? . ... OPLS-AA? in All-atom automatic OPLS-AA topology? ... 2011 ERG Research Group . ...

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... The results will be also sent to you via E-MAIL to address: sherlock1991@rambler.ru . ... BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA ...

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• petri_dish: 69a4724e7cac bacteria.py

Network Working Group Request for Comments: 940 GADS April 1985 Toward an Internet Standard Scheme for Subnetting STATUS OF THIS MEMO This RFC discusses standardizing the protocol used in subnetted environments in the ARPA-Internet. ... All hosts in the Internet must make a decision when sending a datagram, that is, they must answer the question "Is this datagram addressed to a host on a directly connected network, or must it be sent to a gateway?" ... The use of subnets is an optional local decision. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc940.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc7718.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc7718.txt

Date and Place of Birth: December 16, 1958; Moscow, Russia . ... Kabanov V.A., Lachinov M.B., Makhaeva E.E., Starodubtsev S.G., Golubev V.B. Induction of degenerated branching of kinetic chains during three-dimensional radical polymerization. ... Khokhlov A.R., Kramarenko E.Yu., ... Polymer Sci., ... Nasimova I.R., Makhaeva E.E., Khokhlov A.R. "Poly(vinyl caprolactam) gel/organic dye complexes as sensors for metal ions in aqueous salt solutions" J. Applied Polymer Science 2001 , 81, 3238-3243. ...

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• Science
• Seminar in Polymer Physics

Mustela . On a taxonomic position of the weasel (Carnivora, Mustela ) from the Cheju Island (South Korea) . ... The weasel from Cheju Island (formerly в?' Quelpart Island), which is situated in Korean Strait south of the coast of South Korea, was described as a separate species Lutreola quelpartis Thomas, 1908. ... Abramov A.V. 2000b. The taxonomic status of the Japanese weasel, Mustela itatsi (Carnivora, Mustelidae) // Zoologicheskii Zhurnal. ... A Pictorial Guide to the Mammals of Japan. ...

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• Variation and taxonomic value of some mandibular characters in red-toothed
• Taxonomic position of Eptesicus bobrinskoi - abstract
• The fossil shrew Cretasorex arkhangelskyi Nessov et Gureev, 1981 from

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• Further Information and Bibliography
• Ranking

Электронная библиотека Попечительского совета . ... Jenkins M.A., Traub J.F. - Algorithm 419: zeros of a complex polynomial [C2] . ... Название: Algorithm 419: zeros of a complex polynomial [C2] . Авторы: Jenkins M.A., Traub J.F. Аннотация: . The subroutine CPOLY is a Fortran program to find all the zeros of a complex polynomial by the three-stage complex algorithm described in Jenkins and Traub [4]. ... The algorithm is similar in spirit to the two-stage algorithms studied by Traub [1, 2]. ...

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• Поиск книг, содержащих General position :: Электронная библиотека
• Bao-Yen Tsui J. - Fundamentals of Global Positioning System Receivers: A
• Glaser L.C. - Geometrical Combinatorial Topology. Volume I :: Электронная

... The paper, which is based upon plenary lecture presented at XVIII Tchugaev Conference on the Chemistry of Coordination Compounds (Moscow, 1996), reviews major steps of the molecular design of polydentate complexing agents with predefined properties (in particular, coordination stereochemistry). ... The consistent use of all three levels design tools is illustrated by the design of aminopolycarboxylate lanthanides chelators for prospective MRI (Magnetic Resonance Imaging) application. ...

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• Molecular mechanics calculations of beta-diketonate, aqua, and
• Single-column method of chelation ion chromatography for the analysis of trace
• Structure and Interaction Energies of the Ar...Cl2 Complex. Application of the

Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/163.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/126.pdf