... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred

. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• SDPpred
• About this project
• About authors ot this complex

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... 6 import sequence . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 44 self . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ):...

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• allpy: ee2c10aa74b8 allpy/markup.py
• allpy: bd3d695f9906 lib/project.py
• allpy: 675b402094be lib/block.py

Positioning of Nucleosomes at DNA Containing Short Periodic Sequences A.P Lifanov1,3, V.J. Makeev1,2, N.G. Esipova 1 2 1 V.A. Engelhardt Institute of Molecular Biology, Moscow, Russia Vavilov Institute of General Genetics, Moscow, Russia 3 johnnie_me@list.ru Nucleosome distribution, alongside with histone modifications and RNA polymerase II (Pol II) occupancy shows preferential association with exons ( ... Histogram of relative positions of nucleosome and exon borders is shown in Fig. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/4.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/156.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... K. Krylov . There was undertaken a research of lengthes of marinon - some integral units obtained by segmenting of comleted (whole) fiction prosaic texts (stories, small novels, novels). ... Overall corpus of considereded texts (Russian fiction prosaic) contain more than two million of graphic running words. Undertaken research has lead us to revealing of three main regularities. 1) to formulation of the law of optimum relation between number of elements within each submicroscopic level; . ...

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• MSU-LGCLL:: Krylov J.K. - On the Nature of Koehler's Effect

Next: Star Formation Rate and Up: No Title Previous: Calculation of Evolutionary Tracks . To start calculations, we choose the distributions of the initial binary parameters: the mass of the primary ZAMS component, , binary mass ratio, , orbital separation a . ... whereas the mass ratio distribution is not. ... The zero assumption often made is that the mass ratio distribution has a flat shape, that is binaries with a high mass ratio occur as frequently as those with equal masses. ...

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• Calculation of Evolutionary Tracks
• Effect of sources evolution on
• Number of accreting X-ray binaries of selected types

by Margarita Dzhalalova It is known that the pressure difference values for a round parachute are constant over total canopy, then for a square parachute the values of pressure difference are non-uniform along radial ribbons differing even from each other and depending mainly on certain sets of line lengths, and therefore square parachutes attain different shapes from each other ( Fig.1 - photo of var.1 and var.2). ... Distribution of pressure coefficient along radial ribbons of square parachute. ...

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• Air-Permeability Influence on Pressure Distribution Character

IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/formatrpsdb.html
• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/rpsblast.html
• http://kodomo.cmm.msu.ru/~mikhail88/term4/evolution.files/distmat.txt

... As a point of departure consider Russian data, where nouns denoting male individuals are always masculine (1a), while nouns denoting female individuals are always feminine (1b). (1) a. xorСs-ij good-MASC.N. `good father' SG ot'Иc father.N. SG (MASC b. xorСs-aja ) good-FEM.N.SG `good mother' mАt' mother.N. SG (FEM ) Thus, we can predict grammatical gender of a noun (`masculine' or ` feminine') on the basis of its semantics (`male' or `female') (Corbett 1991). ... Halkomelem lacks n-GENDER. ...

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• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/romanova.pdf
• http://www.philol.msu.ru/~otipl/new/mscl/2008/abstracts/ramaglia.pdf

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• The Network Time Protocol (NTP) Distribution
• SAL- Numerical Analysis - Misc - Colt
• Building and Installing the Distribution

... sepals and stamens - five petals fused at the base to form a tubular structure - found mainly along coastal limestone rocks Six flower color morphs have been observed - pink , yellow , yellow corolla with white calyx flowers, white, orange and ivory - pink and yellow morphs are the most frequent Distribution - Daito and Izu-Ogasawara Islands of Japan - Taiwan (offshore eastern region) - Ryukyu Archipelago Leapfrog ... Common haplotypes were not restricted to a certain flower...

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• http://herba.msu.ru/shipunov/school/biol_330/presentations/gymnosperms/gymnosperms.pdf
• http://herba.msu.ru/shipunov/plans/sh-pstr1.pdf
• http://herba.msu.ru/shipunov/school/biol_330/2013_2014/presentations/placozoa/placozoa_presentation.pdf

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• AliComp - GeneBee Alignment Comparison Help
• DIMACS Series in Discrete Mathematics
• Biochemistry (Moscow), Vol

... Proceedings of the 4 th Intern.Conf. on Ecologocal Engineering for Wastewater Treatment. ... Taking the lignosulphonates of the different cationic form (Na + , Ca +2 , Al +3 or H + ) and fraction (low molecular mass and colloid fractions) compositions, we considered some series of colloid-chemical phenomena, which are the basic adsorption methods of water purification of cycle wastewater at the factories of wood and paper industries. ... J.Colloid Sci. 1960, v. 15, p. 452. ...

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• Moscow University Chemistry Bulletin Vol. 50, No. 5 (2009)
• Moscow University Chemistry Bulletin Vol. 51, No. 5, P. 339 (2010)
• Moscow University Chemistry Bulletin Vol. 50, No. 5, P. 303 (2009)

... Systematics and phylogeography of the steppe whiskered bat Myotis aurascens Kuzyakin, 1935 (Chiroptera, Vespertilionidae) . ... Phylogenetic relationships were examined among specimens identified as Myotis aurascens Kuzyakin, 1935 from across their distribution (Europe to the Korean Peninsula), and also among M. aurascens and other Myotis species. ... Литература Скачать PDF . ... The mammal fauna of Cat Ba Island, northern Vietnam . ...

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• The distributions of telomeric and ribosomal DNA on the chromosomes of two

... Trajectories of the filaments and distribution of the plasma density were obtained for different angles of convergence of the beams and various time delays between pulses. ... The position of the filaments in crossed beams can be controlled by changing the angle of the convergence of the beams or the time delay between pulses. ... The longitudinal position of the filament (peak pulse power fixed) depends both on the phase difference between the beams and the angle of convergence of the beams . ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2006/Kostryukov_Tunkin_en.pdf

This diagram shows how the 'vertical-align' properties on cells combine to determine the height of the row containing the cells. The diagram also illustrates the meaning of some values of 'vertical-align' that apply to table cells: baseline, top, bottom, and middle. The diagram shows a row of five (labeled) table cells of varying heights and alignments. ... The first cell is aligned with the row baseline and extends to just below the row top. ...

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• Dynamic HTML in Communicator
• Energy distribution
• Long description illustrating absolute positioning with respect to the initial

Laboratories \ Laboratory for Ecology of Lower Vertebrates \ Goals and Tasks . Goals and Tasks . ... Ecology of organisms and communities . ... Geographic variation of morphological features, species structure, distribution, peculiarities of growth, feeding, spawning and population structure of Siberian sturgeon were studied within its natural range. ... Long-term dynamics of teratogenesis in the young acipenserids, bred in the Volga fish-hatcheries, was analyzed. ...

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• Laboratories: Molecular Diagnostics Methods Room: Results
• Laboratories: Laboratory for Soil Zoology and General Entomology: Goals and
• Laboratories: Laboratory for Comparative Ethology and Biocommunication: Results

... For SUSY this quantum numb er is R-parity, for IDM that is sp ecific D-parity 2 Most probable: Dark matter particle is neutral D0, Mass < 60 - 70 GeV,(to prevent annihilation D0D0 W +W - even slightly b elow threshold) The charged particles having the same quantum numb er DБ are heavier than 100 GeV (LEP), In the scalar case the counterpart with opp osite P-parity DA also exists, they are lighter than ab out 120 GeV(LEP). ... Their cross sections contains additional factor - two orders lower. ...

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