... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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NonPEST : a nonparametric method for Transcription Start Site prediction Tatiana Tatarinova, Laboratory of Applied Pharmacokinetics, University of Southern California , Los Angeles, USA, Tatiana.tatarinova@lapk.org Alyona Chubatiuk Department of Mathematics, University of Southern California , Los Angeles, California , USA , achubatiu@usc.edu Michael Neely Laboratory of Applied Pharmacokinetics, University of Southern ... NonPEST was able to predict positions of TSS for 13,208 loci. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf

Formatrpsdb: Build databases for RPS Blast Introduction ------------ Formatrpsdb is a utility that converts a collection of input sequences into a database suitable for use with Reverse Position Specific (RPS) Blast. Each input sequence, together with its position-specific scoring matrix (PSSM), is ASN.1 encoded into a PssmWithParameters (or 'scoremat') object and resides in a separate file. ... An RPS Blast database consists of two groups of files. ...

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... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• SDP home page
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. Next: Initial velocity Up: Space and velocity distributions Previous: Space and velocity distributions . Following Paczynsky (1990), we assume initial space distribution of young neutron stars to be varying exponentially with distance from the Galactic center and from the Galactic plane, that is probability distribution for young neutron star positions can be written in the form . with kpc, and pc. Mike E. Prokhorov . Fri Jul 19 19:16:07 MSD 1996

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... The Network Time Protocol (NTP) is used to synchronize the time of a computer client or server to another server or reference time source, such as a radio or satellite receiver or modem. ... Information on the NTP architecture, protocol and algorithms can be found in the Further Information and Bibliography page. The Building and Installing the Distribution page presents an overview of the procedures for compiling the distribution and installing it on a typical client or server. ...

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• SAL- Other Scientific Fields - Physics Astronomy - xsky
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... 6 import sequence . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 44 self . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ):...

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• allpy: 9b91b49b9ef0 lib/project.py
• allpy: 3d40d7b9a123 lib/project.py
• allpy: 7dd461d17f96 lib/project.py

Электронная библиотека Попечительского совета . ... Narkiewicz W. - Uniform Distribution Of Sequences Of Integers In Residue Classes . ... Название: Uniform Distribution Of Sequences Of Integers In Residue Classes . Автор: Narkiewicz W. Язык: . ... Sequence uniformly distributed mod N 1 . Sequence weakly uniformly distributed mod N 8 . ... Uniform distribution mod N 1 . Uniform distribution mod N, criterion 1 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Version history . ... Fortran-DVM and C-DVM languages supported data distribution by equal blocks and corresponding distribution of parallel loop iterations (data parallelism). ... A new toolkit - DVM-program performance analyzer was included in the version. ... Fortran-DVM and C-DVM languages support now data distribution by non-equal blocks and parallel executed program section specification (task parallelism). ... The version 3.30 (27.12.2000) is differ from version 3.15 in the following: . ...

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• Fortran DVM language description. Part 3 (7-12)

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression
• 1QPI biounits
• NPG-explorer

... To run the <LAYER> version of the example, select: flower.htm . ... However, if the page had several layers with absolute positions, and you wanted to place another layer in a relative position to one of the existing layers, you could use inline JavaScript to calculate the value for LEFT or TOP . ... In this example, there is really no need to use inline JavaScript to position the last flower layer, since you could just let the TOP value default to its natural value, as in the other flower layers. ...

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• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating positioning with respect to a
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... Obtaining and Unpacking the Distribution . ... mpich can be obtained by anonymous ftp from the site info.mcs.anl.gov . ... uncompress mpich.tar.Z tar xvf mpich.tar This will create a single directory called mpich , containing in various subdirectories the entire distribution, including all of the source code, some documentation (including this Guide ), man pages, the mpich environment described in Section The
 mpich
 Programming Environment , and example programs. ... Центры . ...

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PHP Manual . ... PHP offers the ability to create Shockwave Flash files via Paul Haeberli's libswf module. ... Once you've successfully installed PHP with Shockwave Flash support you can then go about creating Shockwave files from PHP. ... swf_closefile -- Close the current Shockwave Flash file . swf_labelframe -- Label the current frame . ... swf_defineline -- Define a line . ... swf_definefont -- Defines a font . ... swf_perspective -- Define a perspective projection transformation . ...

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• Unix/Linux installs
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There are several sets of disribution functions presented by CTEQ collaboration which describe the densities of quarks and gluons in (anti)proton. In CompHEP we have implemented the CTEQ4m [ CTEQ-1997 ] set. Apart from the Feynman variable they depends on the QCD-scale parameter . The available range is . ... The CTEQ4m set of functions is produced in the framework of the next-to-leading calculations in the standard scheme with . See further explanations in [ CTEQ-1997 ]. ...

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• VEGAS menu
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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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Introduction to Gymnosperms Group of seed bearing plants that contain conifers, cycads, Ginkgo, and Gnetales. ... The 5 main lineages separated from each other during the late Carboniferous to late Triassic (311-212 mya) While many species such as Ginkgo biloba are living fossils,due to pulses of extinction and specialization most living gymnosperm species are much younger then though to be. ... Due to these climate changes older lineages of gymnosperms are mostly found in the southern hemisphere. ...

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Firefly Quantum Chemistry Package Download Area Terms of Use . ... The VISITOR is any individual, research group, institution or organization, or agent who downloads any files or archives containing Firefly Quantum Chemistry Package distribution files ( DISTRIBUTION ) from the Firefly Quantum Chemistry Package Download page(s). ... The copyright and other intellectual property rights in the DISTRIBUTION are the property of the Firefly Project Team. ...

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• PC GAMESS/Firefly DOCUMENTATION - FAST MATRIX DIAGONALIZATION AND INVERSION

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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Network Working Group D. Harrington, Ed. Request for Comments: 5249 Huawei Technologies (USA) BCP: 139 July 2008 Category: Best Current Practice Templates for Internet-Drafts Containing MIB Modules Status of This Memo This document specifies an Internet Best Current Practices for the Internet Community, and requests discussion and suggestions for improvements. ... Abstract This memo references three annotated templates for IETF documents that contain the definition of MIB modules. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc5249.txt.pdf

... For the investigations of the phenomenon leading to non inflation (squidding) of parachute, the influence of canopy permeability and upstream flow on the character of pressure distribution along framework model, imitating round parachute, was studied experimentally. ... The pressure sensors: 13 ones inside and 13 - outside the canopy have been placed for the study of distribution of internal and external pressure on the surface of the model. ... Variant 1. ... Parachute Science] . ...

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• Pressure Distribution Peculiariry Along Square Canopy