All Firefly versions can take optional command line arguments. ... firefly [optional command line options in any order] [optional list of working directories] . ... The list of most widely used command line options is given below: . ... Disables validity check of the command line arguments (e.g., check for valid names of files and directories, etc...) passed to Firefly. ... However, if this option is not given, one must provide the list of working directories when running Firefly in parallel mode. ...

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... A regular expression pattern to extract some text from a topic (does not search meta data; use $formfield instead). In case of a multiple="on" search, the pattern is applied to the line found in each search hit. ... SEARCH{ "FAQ" scope="topic" nosearch="on" nototal="on" header=" * *Topic: Summary:*" format=" * [[$topic]]: $summary" }% . SEARCH{ "FAQ" scope="topic" nosearch="on" nototal="on" header=" * *Topic: Summary:*" format=" * [[$topic]]: $summary" footer=" * *Topic: Summary*" }% . ...

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• %TOPICTITLE% (18 vs. 19) - TWiki

... Floating point numbers (AKA "floats", "doubles" or "real numbers") can be specified using any of the following syntaxes: . a = 1.234; $a = 1.2e3; $a = 7E-10; The size of a float is platform-dependent, although a maximum of ~1.8e308 with a precision of roughly 14 decimal digits is a common value (that's 64 bit IEEE format). ... It is quite usual that simple decimal fractions like 0.1 or 0.7 cannot be converted into their internal binary counterparts without a little loss of precision. ...

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. Options modify the way that a command works. They usually consist of a hyphen followed by a single letter. For example the wc command counts the number of words, characters and lines in a file. By using a different option you can choose what is counted. wc -w file1 counts the words wc -c file1 counts the characters wc -l file1 counts the lines . Using multiple options .

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... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

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... Starting Multiple Executables and Establishing Communication . Up: Process Manager Interface Next: Reserved Keys Previous: Starting Processes and Establishing Communication . ... The following routine spawns multiple binaries or the same binary with multiple sets of arguments, establishing communication with them and placing them in the same MPI_COMM_WORLD. ... MPI_COMM_SPAWN_MULTIPLE is identical to MPI_COMM_SPAWN except that there are multiple executable specifications. ... Центры . ...

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... Traditionally, UUCP talks of dialers rather than modems, because in earlier times, it was usual practice to have one (expensive) automatic dialing device serve a whole bank of modems. ... Similar to the login chat, it consists of a sequence of strings uucico sends to the dialer and the responses it expects in return. ... When uucico detects a chat-fail string while executing the modem chat, it aborts the call, and logs the error message in the UUCP log file. ...

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... Building Packages for Multiple Architectures and Operating Systems . ... This is done by matching information from the build system's uname output against a number of rpmrc file entries. ... Specifically, these entries are used to create a table that maps information from uname to the appropriate architecture/operating system name. ... The --buildarch and --buildos options can be used to set the build-time architecture and operating system rather than relying on RPM's automatic detection...

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... The following is a tabulation of socket numbers together with the services offered. ... 1 UCLA-NMC 1 Telnet 241 NCP Measurement 243 Survey Data 2 SRI-ARC 1 Telnet 3 File Transfer 5 Echo 7 CPYNET 9 SYSTAT 13 DATE-TIME 3 UCSB 1 Telnet 5 UCSB RJS [not ARPANET standard] 7 Echo 9 Discard 4 UTAH 1 Telnet 3 File Transfer 5 Echo 7 CPYNET 9 SYSTAT 13 DATE-TIME 5 NCC 6 MIT-Multics 1 Telnet 9 Harvard 1 Telnet 3 Sorry File Transfer 10 LL-67 1 ...

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... Schroeder M. - Number theory in science and communication: with applications in cryptography, physics, digital information, computing, and self-similarity . ... Название: Number theory in science and communication: with applications in cryptography, physics, digital information, computing, and self-similarity . ... If nothing else, the advent of the digital computer and digital communication has seen to that. ... computer science, digital communication, cryptography and more playful things, . ...

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This module provides support for dynamically configured mass virtual hosting . ... Source File: mod_vhost_alias.c . ... For simple name-based virtual hosts you might use the following directives in your server configuration file: UseCanonicalName Off VirtualDocumentRoot /usr/local/apache/vhosts/%0 . A request for http://www.example.com/directory/file.html will be satisfied by the file /usr/local/apache/vhosts/www.example.com/directory/file.html . ... Module: mod_vhost_alias . ...

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Detection of short size mutations and copy number alterations in ultra-deep targeted sequencing data Valentina Boeva, Emmanuel Barillot, Institut Curie, valentina.boeva@curie.fr Jean-Francois Laes OncoDNA, jf.laes@oncodna.com The emergence of the amplicon sequencing technique, which followed whole exome sequencing, promises a revolution in cancer diagnostics and treatment. ... Visualization of the typical configuration of read mappings (with Integrative Genomics Viewer). ...

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System parameters on Digital UNIX . ... Digital and Cray use the number of bytes as the KIND -parameter. ... LOGICAL Default byte word KIND number = 4 1 4 LOGICAL Default double quad KIND number = 4 8 16 INTEGER int15 int31 int63 KIND number = 2 4 8 digits = 15 31 63 radix = 2 2 2 range = 4 9 18 huge = 32767 2147483647 9223372036854775807 bit_size = 16 32 64 REAL single double quad KIND number = 4 8 16 digits = 24 53 113 maxexponent = 128 1024 16384 minexponent = -125 -1021 -16381 ...

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A Quick Guide To UNIX This is an introduction to the UNIX operating system. ... More information on the options, the effects and how to use the commands is available by using the man command : man gives manual information on a topic man grep displays the manual page about grep Another useful source of information is the on-line EMBnet tutorial which includes a page on UNIX FILES ls more lists files in a directory ls -alF lists -a all ...

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... find changesets by author, revision, files, or words in the commit message . ... files . allpy/homology.py . ... Sequences must be marked up by numbers before .writ_block ) 1.122 exit() 1.123 - ResidueHomology.write_monomer( file , monomer_id , self .next_class_id) 1.124 + ResidueHomology.write_monomer( file , monomer_id , self .next_class_id, column_number = column_number ) 1.125 1.126 self .next_class_id +=1 1.127 1.128 1.129 #######################3# 1.130 def _sequences_of_class( ...

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... This command specifies the default delay to be used under these circumstances. ... This command configures a trap receiver at the given host address and port number for sending messages with the specified local interface address. ... While such monitor programs may also request their own trap dynamically, configuring a trap receiver will ensure that no messages are lost when the server is started. setvar variable [ default ] . This command adds an additional system variable. ...

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A collection class is a class that can contain a number of items in a certain data structure and perform operations on the contained items; insert, remove, find etc. ... QList ; a doubly linked list structure. ... An iterator is a class for safely traversing the items in a collection: . ... Qt has an array template class, QArray , which stores the items directly in the array. ... We discuss QList here, but the same applies for all collection classes and all collection class iterators. ... Classes: . ...

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... K. Krylov . There was undertaken a research of lengthes of marinon - some integral units obtained by segmenting of comleted (whole) fiction prosaic texts (stories, small novels, novels). ... Overall corpus of considereded texts (Russian fiction prosaic) contain more than two million of graphic running words. Undertaken research has lead us to revealing of three main regularities. 1) to formulation of the law of optimum relation between number of elements within each submicroscopic level; . ...

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... This gropup of options allows You to change the following speech recording parameters: . ... This gropup of options allows You to change the following parameters of linear prediction: coefficients calculation: . ... This gropup of options allows You to change the following speech processing parameters: . ... This gropup of options allows You to change the following speech recognition parameters: . ... This gropup of options allows You to change the following speech detection parameters: . ...

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... Run program . User's guide . Launching program . Input data format . ... Selecting the number of correlated pairs . ... In order to run thr program one needs Java 5.0 environment. ... At the end of computations one will be asked to review the selected number of correlated pairs. ... Note: One may redefine the number of correlated pairs by selecting the 'Edit' -> 'redefine correlated pairs number' menu item. Correlated pairs of positions are presented as a colored matrix, the heatmap. ...

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