... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• About authors ot this complex

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... 2 from allpy import dna . ... 6 def my_column_mark ( column , threshold ): . 7 """Helper to mark column (given as dict) by identity.""" . 8 count = {} . 9 for sequence , monomer in column : . ... 11 count [ code ] = count . ... 14 return "+" . ... 19 if column [ 0 ] is None or column [ 1 ] is None : . ... 25 def find_runs ( markup ): . ... 33 plus_positions = [] . ... 46 raise Exception ( "No blocks in alignment" ) . ... 66 for column in alignment . ... 68 markup = alignment . ...

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• allpy: fb1fb5d5327f test/usecase2.py
• allpy: log
• allpy: 675b402094be lib/block.py

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• S : rm_systems
• wLake program homepage

Third Harmonic Generation in Fishnet Metamaterials M. R. Shcherbkov1, J. Reinhold2, A. S. Shorokhov1, A. Chipouline2, C. Helgert2, T. Pertch2, A. A. Fedyanin1 1 Faculty of Physics, Lomonosov Moscow State University, 119991 Moscow, Russia 2 Friedrich-Schiller-UniversitДt Jena, 07743 Jena, Germany shcherbakov@nanolab.phys.msu.ru Abstract: Optical third harmonic generation in gold-based fishnet metamaterials is studied. ...

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Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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• "Phd student position in chemical biology and molecular imaging" - вакансия в

... This guide discusses the concept and use of Dynamic HTML, which includes style sheets, content positioning, and downloadable fonts. ... This document discusses each of the three components of Dynamic HTML, describes how to use them, and gives examples of the use of each one. ... Positioning HTML Content contains the following chapters: Chapter 7, "Introduction," introduces the concept of positioning HTML content and discusses the two kinds of syntax you can use to create positioned blocks of content...

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• Heliophysics, Internal structure and seismology
• Long description for example illustrating positioning with respect to a
• Not so well documented Device Helpers in OS/2

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank
• Genebee Predicted Annotation - Advanced

Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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• Anna Mel'nik - My Home Page

PAWS . PAWS (Parallel Application WorkSpace) is a software infrastructure for use in connecting separate parallel applications within a component-like model. A central PAWS Controller coordinates the linking of serial or parallel applications across a network to allow them to share parallel data structures such as multidimensional arrays. ... http://www.acl.lanl.gov/PAWS/ . ... None . ... User Comments: . ... SAL Home | Parallel Computing | Tools & Utilities . ... SAL@KachinaTech.COM . ...

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• APOD: April 23, 1998 - Three Dusty Stars
• Lighting plug-in
• SAI Supernova catalog

Microsymposium 38, MS015, 2003 (letter format) MARS: MOVEMENT OF GEOGRAPHICAL POLES AND DEFORMATION OF ITS SURFACE. ... The global analysis of the Earth linear structure elements has allowed to define the position of geographical poles in the different geochronological periods [3, 4]. ... It is the curves that unite sequences of geographical poles - poles of symmetry of faults in the global stress field fixed by faults on a surface of the mantle during its rotation around of the core. ...

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• http://selena.sai.msu.ru/Bus/Publications/ms34/MS012.pdf
• http://selena.sai.msu.ru/Pug/Publications/SSR447.pdf

... Two aromatic polyaminocarboxylate ligands, ethylenediaminedi(o-hydroxyphenylacetic acid) (EDDHA) and N,N'-bis(hydroxybenzyl)ethylenediamine-N,N'-diacetic acid (HBED), were applied for the separation of transition and heavy metal ions by the ion-exchange variant of electrokinetic chromatography. ... The separation of Co(III), Fe(III) complexes with different arrangements of donor groups and oxidation of Co(II), Mn(II), Fe(II) ions in reaction with HBED have been discussed. ...

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• Moscow University Chemistry Bulletin Vol. 46, No. 4, P. 279 (2005)
• Moscow University Chemistry Bulletin Vol. 50, No. 5, P. 382 (2009)
• Molecular Structure and Conformations of Bicyclopentyl, C5H9-C5H9, as Studied

... Полная версия этой страницы: PhD position in molecular dynamics, nanoscience, USA . Студенческий форум Физфака МГУ > Физфак и учеба > Аспирантура . ... Applications are invited for PhD studies focused on theoretical and computational design and modeling of novel (hybrid) nanoscale systems, operated by . ... The candidates will learn how to use ab-initio electronic structure and quantum transport methods, molecular dynamics simulations, . ...

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• Студенческий форум Физфака МГУ > Theoretical PhD studies, PhD positions for
• Theoretical PhD studies, PhD positions for Fall 2010 - Студенческий форум
• Студенческий форум Физфака МГУ > PhD positions in Switzerland

Three Dusty Stars . ... Explanation: These separate radio images reveal three dusty debris disks surrounding three bright, young, nearby stars - evidence for solar systems in formation. ... The false color maps show the intensity of submillimeter radio emission from the surrounding dust. ... These observations are likely examples of what our solar system would have looked like to distant radio astronomers when it was only a few hundred million years old! ... NASA Official: Jay Norris. ...

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• Three Dusty Stars
• Астронет > Three Dusty Stars
• Earths Richat Structure

... Investigations of the electrical properties of PbSnTeS, PbSnTeSe, and PbSnSeS solid solutions confirmed an earlier hypothesis that the positions of the tin atoms were off-center and that the tunnel motion of these atoms were suppressed in the anion sublattice. ... Other works on off-center impurities ...

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• EXAFS studies of the local structure of In in PbTe, SnTe and GeTe
• Influence of Se, Pb and Mn impurities on the ferroelectric phase transition in
• EXAFS studies of semiconductors and ferroelectrics

... Cartesian Shift Coordinates . ... If the process topology is a cartesian structure, a MPI_SENDRECV operation is likely to be used along a coordinate direction to perform a shift of data. ... MPI_CART_SHIFT(comm, direction, disp, rank_source, rank_dest) . ... IN direction] coordinate dimension of shift (integer) . ... Depending on the periodicity of the cartesian group in the specified coordinate direction, MPI_CART_SHIFT provides the identifiers for a circular or an end-off shift. ... Центры . ...

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• MPI_File_get_position | PARALLEL.RU - Информационно-аналитический центр по
• Low-level topology functions | PARALLEL.RU - Информационно-аналитический центр

... Students . ... Laboratory of Lithology and Facial Analysis . ... Laboratory of Marine Geology . ... The laboratory was organized as structural division of Faculty of Geology by the order of the Minister of Education of RSFSR in March, 1967. ... According to new structure of Faculty of Geology in 1976 the laboratory was included in structure of the Department of Dynamic Geology, and in 1983 was one of two laboratories including in structure of new Department of Lithology and Marine Geology. ...

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DISC OURSE FUNC TIONS OF POSSESS IVE PRONO UNS IN R USSIAN Two main functions of possessive pronouns (PossPrn) in Russian are identifying the possessor ( `my dog') and filling an argument slot of a noun ( `her return'). Sometimes possessive pronouns, especially the reflexive ones, bear additional components of meaning (see [Paducheva 1983: 6-7]). This paper focuses on cases when a PossPrn doesn't have such additional components, and yet the possessor is unambiguously determined by the context. ...

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• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/steriopolo.pdf
• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/romanova.pdf
• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/damonte.pdf

Электронная библиотека Попечительского совета . ... Weiss M.A. - Data Structures and Problem Solving Using C++ . ... Название: Data Structures and Problem Solving Using C++ . Автор: Weiss M.A. Аннотация: . Data Structures and Problem Solving Using C++ provides a practical introduction to data structures and algorithms from the viewpoint of abstract thinking and problem solving, as well as the use of C++. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• G?nther A. - Large-scale Structures in Rayleigh-Benard Convection and Flow Over
• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека
• Pauling L., Goudsmit S. - The Structure of Line Spectra :: Электронная