Formatrpsdb: Build databases for RPS Blast Introduction ------------ Formatrpsdb is a utility that converts a collection of input sequences into a database suitable for use with Reverse Position Specific (RPS) Blast. Each input sequence, together with its position-specific scoring matrix (PSSM), is ASN.1 encoded into a PssmWithParameters (or 'scoremat') object and resides in a separate file. ... An RPS Blast database consists of two groups of files. ...

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• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/impala.html

... These functions allow you to access FrontBase database servers. ... fbsql_database_password -- Sets or retrieves the password for a FrontBase database . ... fbsql_fetch_field -- Get column information from a result and return as an object . ... fbsql_field_flags -- Get the flags associated with the specified field in a result . fbsql_field_name -- Get the name of the specified field in a result . ... fbsql_field_seek -- Set result pointer to a specified field offset . ... fbsql_affected_rows ...

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Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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siggen . Make your linux box into a laboratory Signal Generator. Several Signal and tone Generation programs that accurately generate waveforms or sequences or waveforms via /dev/dsp. Both command line programs and Ncurses based interactive programs are provided for a simple signal generator and also for a "sweep" generator where both the sweeping and swept waveform and frequencies can be specified. ... Linux . ... None . ... SAL Home | Computer Graphics, Images Signals | Misc . ...

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Maximum RPM: Taking the Red Hat Package Manager to the Limit . ... When RPM can't decipher a package's version number, it's time to pull out the serial tag. ... In order to direct RPM to look at the serial number instead of the version number when doing dependency checking, it's necessary to append an " S " to the end of the conditional operator in the requires tag line. So if a package requires package foo to have a serial number equal to 42, the following tag line would be used: . ...

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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Network Working Group Request for Comments: 3589 Category: Informational J. Loughney Nokia September 2003 Diameter Command Codes for Third Generation Partnership Project (3GPP) Release 5 Status of this Memo This memo provides information for the Internet community. ... Author's Address John Loughney Nokia Itamerenkatu 11-13 00180 Helsinki Finland EMail: john.Loughney@Nokia.com Loughney Informational [Page 4] RFC 3589 Diameter Command Codes for 3GPP Release 5 September 2003 8. ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... The tool is used for translating IDL-specifications to C++ as well as feeding IDL-specifications into the interface repository. The idl tool takes its input either from a file or an interface repository and generates code for C++ or CORBA-IDL. ... This option is off by default. -codegen-c++ . ... By default, the stubs and skeletons generated by the IDL Compiler make use of an efficient MICO specific marshalling interface called the Static Invocation Interface (SII). ... idl account.idl . ...

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... SGML . The text/html content type . In this section, we begin the specification of HTML 4.0, starting with the contract between authors, documents, users, and user agents. ... These recommendations are not normative and conformance with this specification does not depend on their realization. ... An HTML document is an SGML document that meets the constraints of this specification. ... A user is a person who interacts with a user agent to view, hear, or otherwise use a rendered HTML document. ...

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... Thus, the development of a method of synthesis of signals of finite duration, optimal in the sense of maximum concentration of energy in specified frequency ranges, is the actual problem. ... Erik Larsen, Ronald M. Aarts, "Audio Bandwidth Extension: Application of Psychoacoustics, Signal Processing and Loudspeaker Design", John Wiley & Sons, ISBN: 0-470-85864-8, September 2004. ... Time-frequency decomposition, 2. ... Shaping of the energy spectrum envelope of high-frequency content, 4. ...

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... Online Services | ... Construct your query and output by sequental openings of needed fields. One output field must be selected (not be blank) at least. ... Query parameters: . Select for output . ... Energy (keV) . ... Y D H M S MS US NS PS FS AS EV KEV MEV or Stable . ... Energy of the ?-ray (keV) . ... Energy parameters of nucleus (B , Alpha energy, N, P separation energy) . ... Neutron separation energy (keV) . Proton separation energy (keV) . ... Excited energy(keV) . ...

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BIRD SPECIES DATABASE . of the Arctic Birds Breeding Conditions Survey . ... Queries . View list of species . ... Get list of species, for which data are available by pushing "Query" button below "View list of species" invitation. Latin name of a species can be copied from the list to the "Species name" field or typed-in there (but exactly as it appears in the species list). ... Query results will be tabulated in the window below the map, and can be browsed through or copied. ...

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... Line: 1 to 1 . META TOPICPARENT . name="WebHome" . ... Warning: Can't find topic TWiki.UtilTempDocNote . ... Changed: . TWikiMetaData uses META variables to store topic data that's separate from the main free-form content. ... Order of fields within the meta variables is not defined, except that if there is a field with key name , this appears first for easier searching (note the order of the variables themselves is defined). ... Key . ... A topic name - the topic is a Form Template . ...

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... BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. ... The BLAST 2.0 search engine has been designed for optimal speed and sensitivity. ... Gapped BLAST and PSI-BLAST are useful search tools provided by the BLAST server (version 2.0) (Altschul et al., ... You can download blastcl3 form the anonymous FTP location ftp://ncbi.nlm.nih.gov/blast/network/netblast/ . ...

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This module provides for user authentication using Berkeley DB files. ... AuthDBGroupFile . ... The AuthDBGroupFile directive sets the name of a DB file containing the list of user groups for user authentication. ... Combining Group and Password DB files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... The AuthDBUserFile directive sets the name of a DB file containing the list of users and passwords for user authentication. ...

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ADDTOZONE{ "zone" .. ... zone" optional, comma-separated list of the names of zones that the content should be added to. The only zones guaranteed to exist are head and script . ... Never add Javascript to the head zone -- never add non-Javascript content to the script zone. ... In real world application this isn't a problem as Javascript is never added to the head zone or Javascript zone part of the script zone never really depends on non-Javascript content part of the head zone. ...

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... line source . ... 6 def __init__ ( self , * args , ** kw ): . ... init__ ( self , * args , ** kw ) . ... 12 def attach ( self , widget ): . ... 15 widget [ command ] = lambda * args , ** kw : self . ... 17 def _command ( self , * args , ** kw ): . ... 24 def _set ( self , sender , * args , ** kw ): . ... 41 def tag_clear ( self , tag ): . ... 47 def insert ( self , * args , ** kw ): . ... insert ( self , * args , ** kw ) . ... 53 def _select ( self , ev ): . ... 79 names . ... 80 sequences . ...

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... Up: MPI and Threads Next: New Attribute Caching Functions Previous: Clarifications . ... MPI_INIT_THREAD(required, provided) . ... Then MPI_INIT_THREAD will return provided = MPI_THREAD_MULTIPLE, irrespective of the value of required; a call to MPI_INIT will also initialize the MPI thread support level to MPI_THREAD_MULTIPLE. ... Then, a call to MPI_INIT_THREAD will return provided = required; on the other hand, a call to MPI_INIT will initialize the MPI thread support level to MPI_THREAD_SINGLE. ...

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SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins . The Pfam plain text format is one of the formats, in which aligned sequences from the Pfam database can be retrieved. For the correct work of SDPpred gaps are required to be indicated by dashes and all letters indicating amino acids are required to be in upper case. ... TIPA_PHAVU/13-234 EATHPDS--MRASLAEFASTFIFVFAGEG--SGLALVKIYQ- . ... back to input format rules . ...

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