... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank

. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• About this project
• About authors ot this complex
• Homeodomain numeration assumed

Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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The topic of a student research: Patterns recognition of Supersecondary structures Abstract The goal of this project to prove the hypothesis that proteins with identical supersecondary structure have common sequence patterns even if they belong to different protein families and have very low sequence similarities. ... Application of usually used methods of sequence alignment to find the conserved positions is not available here because of very low sequence similarity (less than 10%). ...

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• allpy: 2f851b66a2c7 test/usecase2.py
• allpy: bd3d695f9906 lib/project.py
• allpy: 675b402094be lib/block.py

Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/4.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Computer Graphics, Images Signals - Misc - CGAL
• APOD: 2013 May 19 - Earths Richat Structure
• APOD: January 5, 1998 - Earth's Richat Structure

... As a point of departure consider Russian data, where nouns denoting male individuals are always masculine (1a), while nouns denoting female individuals are always feminine (1b). (1) a. xorСs-ij good-MASC.N. `good father' SG ot'Иc father.N. SG (MASC b. xorСs-aja ) good-FEM.N.SG `good mother' mАt' mother.N. SG (FEM ) Thus, we can predict grammatical gender of a noun (`masculine' or ` feminine') on the basis of its semantics (`male' or `female') (Corbett 1991). ... Halkomelem lacks n-GENDER. ...

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• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/damonte.pdf
• http://www.philol.msu.ru/~otipl/new/mscl/2008/abstracts/ramaglia.pdf
• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/biskup.pdf

... We consider now change-points in different components of the frequency spectrum of typical EEG signal. ... Only few change-points in power are found in the initial EEG (unless a prominent alpha rhythm is present). ... Change-points in different frequency components of the EEG . ... Change-points in different types of the EEG alpha activity without substantial gradual changes . ... As can be seen from Fig. 7.3, the program reliably detected the change-points despite of such variety of signal patterns...

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• Change-points in multi-channel EEG
• Other prospects of the change-point based analysis
• Nonparametric approaches to the description of EEG piecewise stationary

О лаборатории . ... Лаборатория теоретической биофизики . ... System requirements : python 2 (2.6 and higher), python openbabel library, python numpy library. ... The memgen script makes a bilayer membrane from different phospholipids and other lipid compounds (e.g. cholesterol). ... Biochemistry (Moscow) Supplement Series A: Membrane and Cell Biology, 2011, Vol. ... Нет комментариев " Python membrane generator for MD simulations " . ... 2011 ERG Research Group . ...

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Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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... The pivotal role of the beta 7 strand in the intersubunit contacts of different human small heat shock proteins. ... It is concluded that the beta 7 strand participates in the intersubunit interaction of four human small heat shock proteins (alpha B-crystallin, HspB1, HspB6, HspB8) having different structure of beta2 strand of alpha-crystallin domain and different length and composition of variable N- and C-terminal tails. ...

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• Effect of mutations in the beta5-beta7 loop on the structure and properties of
• Structure, properties, and probable physiological role of small heat shock
• Effect of mutations mimicking phosphorylation on the structure and properties

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Dynamic HTML in Communicator
• Not so well documented Device Helpers in OS/2

First-principles calculations of nonlinear optical properties of undoped and Zr- and Nb-doped KTiOPO4 A. I. Lebedev Physics Dept., ... In this work, the structure of the ferroelectric phase in undoped KTP and its solid solutions doped with zirconium and niobium is calculated within the density functional theory, and the second-order nonlinear susceptibility tensor and spontaneous polarization are calculated for these crystals. ... Comp onent d33 d24 = d32 d31 = d15 This work 15.06 4.51 1.19 Ref. ...

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• EXAFS studies of the local structure of In in PbTe, SnTe and GeTe
• New arguments in support of the off-center positions of the tin atoms in
• First-principles calculations of physical properties of crystals

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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... Menzerath's Law for Morphemic Structures of Words: . A Hypothesis for the Evolutionary Mechanism of its Arising and its Testing . Anatoliy A. Polikarpov . ... Key words: Menzerath's Law, morphemic structures, language evolution . ... In this paper there is present (1) a hypothesis for understanding the evolutionary mechanism responsible for the Law arising and (2) some data for testing the hypothesis. ... A Hypothesis. ... Altmann, G. Prolegomena to Menzerath's Law//Glottmetrika 2. ...

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• МГУ - ЛОКЛЛ:: Закон Менцерата
• MSU-LGCLL:: Krylov J.K. - On the Nature of Koehler's Effect

Электронная библиотека . ... Главная Ex Libris Книги Журналы Статьи Серии Каталог Wanted Загрузка ХудЛит Справка Поиск по индексам Поиск . ... Поиск по указателям . Результат поиска . Книга . Страницы для поиска . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека
• Cain T. - Hardening, Tempering and Heat Treatment: The Structure of Steel and
• Weiss M.A. - Algorithms, data structures, and problem solving with C++ ::

The CompHEP symbolic output can be used for further manipulation with an answer which has been obtained by means of the built-in symbolic calculator. It might be a summation of all diagrams to a common denominator expression, a symbolic integration of answer, a representation of answer as a function of special set of variables and so on. ... As it was mentioned above (Section ) the result obtained by summation of all diagrams must be symmetrized in the case of identical outgoing particles. ...

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• MRS structure functions