... file . ... file log . ... To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. ... 1 Using library in-place . ... 18 NEWS file . ... 21 NEWS file contains news that are important to the library users, not to the . ... It must contain a word abot every change in any interfaces. ... 23 contain a word about bugfix, if that bugfix was important and could cause users . ... 38 * change(!): critical library interface change . ...

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• allpy: README.devel annotate
• allpy: bf873e4054c2 README.devel
• allpy: 9c00d065c054 README.devel

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• Geometrical core

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Inquiry information || Rule of four sequences
• Inquiry information || Distances

Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... Changed: . ... TWiki is written in Perl 5 and also uses some shell commands . ... RCS (for revision control) must be installed on the system. ... You can easily rename the root TWiki directory - twiki - to whatever you like by changing it in the twiki.cfg configuration file. ... list . ... twiki/lib/TWiki/Plugins . ... Back-end storage, *.txt text file and *.txt,v RCS repository file handling . ...

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• %TOPICTITLE% (15 vs. 16) - TWiki

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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Sternberg Astronomical Institute, Moscow University The idea behind this project is rather simple: using CGI scripts as processing tools and WWW browser as user interface, display the structure and content of typical anonymous FTP server in a convenient, easily navigated form. ... search through file/directory names, descriptions and README files; . ... The current goal of FTPdig project is to build University-wide network of ftp servers unified by the same interface and database. ...

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• Line Disciplines and Streams Modules
• Scratchbuilt CHU Receiver
• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER

... You can, if desired, restrict access to specified client IP addresses. Proposed directory for placement: /pub/os2/apps/internet/ftp/server/ Your name: Peter Moylan Email address: peter@pmoylan.org Program contact name: (same) Program contact email: (same) Program URL: http://www.pmoylan.org/pages/os2/FtpServer.html Would you like the contact email address included in listings? no Operating System/Version: OS/2 Warp 3 or later Additional requirements: (none) Replaces: ftpser2.0.zip ...

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• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/text-archives/ftpser1.34.txt
• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/text-archives/ftpser1.35.txt
• http://crydee.sai.msu.ru/ftproot/pub/comp/os/os2/hobbes/incoming/ftpser2.0.txt

... The software models the dynamics of RNA secondary structure by the means of kinetic analysis of folding transitions of a growing RNA molecule. The result of the modeling is a kinetic ensemble, i.e. a collection of RNA structures that are endowed with probabilities, which depend on time. ... 19, Moscow, 127994, Russia. ... Danilova, L.V., Pervouchine, D.D., Favorov, A.V., Mironov, A.A. (2006) RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA. ...

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• SDPsite - PF07978
• SDPsite - PF01206
• SDPsite - PF01399

The Linux System Administrators' Guide . ... This chapter describes the important parts of a standard Linux directory tree, based on the FSSTND filesystem standard. ... This chapter is loosely based on the Linux filesystem standard , FSSTND, version 1.2 (see the bibliography), which attempts to set a standard for how the directory tree in a Linux system is organized. ... The intention is not to describe every file, but to give an overview of the system from a filesystem point of view. ... Home . ...

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• mod_auth_dbm - Apache HTTP Server
• The /etc directory
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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Genebee Predicted Annotation - Advanced
• Genebee Predicted Annotation
• Screening protein sequence against PROSITE databank

... Class . ... Provides an abstraction for multidimensional array access, some concrete implementations, and ways to view a MultiArray as if it had a different structure. ... This interface defines the services required by MultiArrayProxy to manipulate indexes and the dimensions of a MultiArray. ... In the following, we use the unadorned term "array" to mean the Java language construct, and the term "multidimensional array" for the mathematical abstraction modeled by the MultiArray class in this...

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• : Package ucar.netcdf
• API Help
• : API Help

... LDAP is the Lightweight Directory Access Protocol, and is a protocol used to access "Directory Servers". ... Search surname entry $sr= ldap _ search ($ds, o=My Company, c=US , sn=S* ); echo Search result is .$sr. p ; echo Number of entires returned is . ldap _count_ entries ($ds,$sr). p ; echo Getting entries ... p ; $info = ldap _ get _ entries ($ds, $sr); ... ldap_get_attributes -- Get attributes from a search result entry . ... ldap_get_entries -- Get all result entries...

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• cpdf_set_font_directories
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... The subcommittee has decided that the file transfer protocol should provide standard methods for requesting the transfer of a file but should not, at this time, attempt to standardize file naming conventions, access control conventions, and the like. Thus a user who is, for example, trying to store a file on a remote Host will be required to use the file naming conventions appropriate to the remote Host. ... May the creator of the file define a set of authorized users to the file system (and how)? ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc180.txt
• http://mirror.msu.net/pub/gentoo-portage/eclass/common-lisp-3.eclass
• Index of /pub/gentoo-portage/dev-ros/pr2_description/

Modules | ... Apache HTTP Server Version 2.0 . ... Provides for user authentication using DBM files . ... This module provides for HTTP Basic Authentication, where the usernames and passwords are stored in DBM type database files. ... Combining Group and Password DBM files: In some cases it is easier to manage a single database which contains both the password and group details for each user. ... This program can be used to create and update DBM format password files for use with this module. ...

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• Index of /static/AltDocs_hd_structure
• Building Packages: A Simple Example
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Электронная библиотека Попечительского совета . ... Allen R., Richards J., Lowe-Norris A.G. - Active Directory . ... Название: Active Directory . Авторы: Allen R., Richards J., Lowe-Norris A.G. Аннотация: . Fully updated to cover Active Directory for Windows Server 2003 SP1 and R2, this third edition is full of important updates and corrections. ... ACLs, Active Directory ACL log . ... Active Directory ACL log . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Heggins D., Taylor W. - Bioinformatics: Sequence, Structure and Databanks ::

... Interface description . ... 6 Distributed array creating and deleting . ... 13.4 Access to elements of local part of distributed array . 13.4.1 Requesting if array element is allocated in local part of distributed array . ... 13.4.5 Coping element of local part of distributed array to element of local part of other distributed array . 13.4.6 Requesting address of element of local part of distributed array . ... 14.5 Access to distributed array elements, allocated in remote element buffer . ...

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• Fortran DVM compiler. Detailed design

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt: program for nucleic acid sequence similarity search
• Align tool for DNA-protein complexes

... Trac uses a directory structure and a database for storing project data. ... A new Trac environment is created using trac-admin's initenv : $ trac-admin /path/to/myproject initenv . ... For example, to connect to a PostgreSQL database on the same machine called trac , that allows access to the user johndoe with the password letmein , use: postgres://johndoe:letmein@localhost/trac . ... Generally, the following is sufficient to create a database user named tracuser , and a database named trac . ...

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• UniProt fields

. Name . Last modified . Size . Description . Parent Directory . - . License . 26-Sep-2011 12:35 . 281 . docinfo . 26-Sep-2011 12:35 . 395 . docinfo.html . 26-Sep-2011 12:35 . 1.5K . index.html . 26-Sep-2011 12:35 . 25K . Apache/2.2.16 (Debian) Server at uneex.mithril.cs.msu.su Port 80

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• Index of /static/LibraryGnomeOrg_Totem
• Index of /static/LibraryGnomeOrg_Evince
• Index of /static/LibraryGnomeOrg_Rhythmbox

Series on Stability, Vibration and Control of Systems, Series A - Vol. ... MULTIPARAMETER STABILITY THEORY WITH MECHANICAL APPLICATIONS . ... This book deals with fundamental problems, concepts, and methods of multiparameter stability theory with applications in mechanics. ... Introduction to Stability Theory . ... Read Full Review . ... Since Bolotin's pioneering book on nonconservation problems on the theory of elastic stability, not many books appeared at such a high level, such as this one. ...

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