... First, calculate percentages of amino acids in every column + contribution = 1.0 / len ( self . sequences ) + all_columns = [] + for position in range( len ( self )): + column _percentage = {} + for seq in self.body : + if self.body [seq][position] is not None : + aa = self.body [seq][position].code + else: + aa = None + if aa in allpy.data.amino_acids: + if aa in column _percentage.keys(): + ...

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• allpy: 3d40d7b9a123 lib/project.py
• allpy: ffc102ed0249 lib/project.py
• allpy: a49f40ace6a8 lib/project.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help
• AliGraf - GeneBee Graphical Alignment Help

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/xyz2grd.html
• http://xray.sai.msu.ru/~ivan/gmt/man/filter1d.html
• http://xray.sai.msu.ru/~ivan/gmt/man/pshistogram.html

Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm
• About this project

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• A Description of NNTP

... MAST - Motif Alignment and Search Tool . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• Множественное выравнивание.
• term1

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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. PHP Manual . Prev . Next . (PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) Ora_Numcols -- Returns the number of columns . int ora_numcols ( int cursor_ind) . ora_numcols() returns the number of columns in a result. Only returns meaningful values after an parse/exec/fetch sequence. See also ora_parse() , ora_exec() , ora_fetch() , and ora_do() . Prev . Home . Next . Ora_pLogon . Up . Ora_Numrows

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• sesam_fetch_result
• sesam_fetch_row
• odbc_columns

HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• Zen: CASDB

This diagram gives one visual rendering of a table that has been marked up especially for aural rendering. The table has a centered caption above it that reads "Travel Expense Report". ... In order to group information in a useful way, the table has a central column group with three columns, labeled "Meals", "Hotels", and "Transport" from left to right. The table's first column (to the left of the central column group) lists days of travel and labels these days with the city visited. ...

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• Long description of example illustrating table row height calculations and
• Long description of example illustrating precedence in the collapsing borders
• Long description of example of cell background calculation

Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 inherit eutils flag-o-matic multilib toolchain-funcs EXTENSIONS = -without- extensions DESCRIPTION= Multiple sequence alignments using a variety of algorithms HOMEPAGE= http:// mafft .cbrc.jp/alignment/software/index.html SRC_URI= http:// mafft .cbrc.jp/alignment/software/${P}${ ...

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/t-coffee/t-coffee-9.03.1318-r1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/fasta/fasta-35.4.10.ebuild

Series on Stability, Vibration and Control of Systems, Series A - Vol. ... MULTIPARAMETER STABILITY THEORY WITH MECHANICAL APPLICATIONS . ... This book deals with fundamental problems, concepts, and methods of multiparameter stability theory with applications in mechanics. ... Introduction to Stability Theory . ... Read Full Review . ... Since Bolotin's pioneering book on nonconservation problems on the theory of elastic stability, not many books appeared at such a high level, such as this one. ...

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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа
• Road monitoring | Graphics and Media Lab
• Road monitoring | Лаборатория компьютерной графики и мультимедиа

The QVBoxLayout class lays out child widgets in a grid. ... QGridLayout ?(?QWidget?*?parent, int?nRows, int?nCols, int?border=0, int?autoBorder?=?-1, const?char?*?name=0?)? . ... void? addWidget ?(?QWidget?*, int?row, int?col, int?align?=?0?)? . ... void? setRowStretch ?(?int?row, int?stretch?)? . ... QGridLayout takes the space it gets (from its parent layout or from the mainWidget ()), divides it up into rows and columns, and puts each of the child widgets it manages into the correct cell(s). ...

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• Qt Toolkit - QGroupBox Class
• Qt Toolkit - QHeader Class
• Qt Toolkit - QBoxLayout Class

. п?я?п?пЎп?пЎпЄя?я?п?пЎ п©пЎп?я?пЇпЎп?п°я?п?п?я? Gnumeric . Prev . Next . COLUMNS -- . COLUMNS(п?п?п я?пЇп©) . пЄпія?пЇпєя?п· COLUMNS я€я?п?я€пўп©п?п©я?п? п?я?п?я?я? п?п?я?я?я?пєя?я€ я€ я?я?я?п©п?п?я? я?я?я? п?п?п я?пЇя? я?п© я?п©п?п?я?я€. Б•еп?я?я? @п?п?п я?пЇп© я?я? п·я€я?п·я?п?п?п· я?п©п?п?я?я€я?я? я?я?я? я?я?п©я?п©п?я?я?я?я?, я€я?п?я€пўп©п?п©я?п?п?п· я?п?я?я?пЇп© #VALUE!. COLUMNS(H2:J3) пўп©я€я?п·я?п?п?п· 3. COLUMN , ROW , ROWS . Prev . Home . Next . COLUMN . Up . COMBIN

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• COLUMN
• DVARP
• DSTDEV

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.  ...

19. Nhunt: program for nucleic acid sequence similarity search

20. CDFE - Centre for Photonuclear Experiments Data - Home page