Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred

Solving of optimization hydrodynamic problems using the distributed computing resources of Moscow University" . Zhumatiy S.A., Sobolev S.I., Stefanov K.S. A software package architecture for solving the optimization problems of aero- and hydrodynamics in distributed computing environments is considered. ... Keywords: hydrodynamics, optimization, distributed computing, X-Com, FlowVision, IOSO . PostScript (in Russian) (713KB) . PDF (in Russian) (165KB) . ... PDF. zip (in Russian) (153KB) . ...

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• "Distributed grid metascheduler"
• "A genetic scheduling algorithm for distributed heterogeneous computer systems"
• "Optimal structure of a distributed grid metasheduler"

Geometrical core (core) is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chains. ... Minimal core size (#aa's) . ... Alternative core new atoms (%) . ... Geometrical core is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chain. ... Each input sequences is aligned to the corresponding sequence obtained from the ATOM section of the protein chain in the PDB file. ...

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• SVETKA, a program for multiple sequence alignments analysis

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/156.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/168.pdf

Next: Results Up: Population Synthesis of X-ray Previous: Population Synthesis of X-ray . ... As we are interested in the evolution of NS and BH in binaries, we consider only massive binaries,   i.e. those having the primary component mass in the range of 10- and distributed according to the Salpeter's mass function   with a power law exponent .35  . ... The total mass of stars formed during the starburst was about 4 (Tamblyn and Rieke, 1993[ 186 ]). ...

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• Calculation of Evolutionary Tracks
• Amplitude Distribution
• Initial Distributions of Binary Parameters

Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 inherit eutils MY_P = ${PN}V${PV} DESCRIPTION= Fast multiple sequence alignments using partial-order graphs HOMEPAGE= http://bioinfo.mbi.ucla.edu/ poa / SRC_URI= mirror://sourceforge/poamsa/${ MY_P }.tar.gz # According to SF project page ...

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.050.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/t-coffee/t-coffee-9.03.1318-r1.ebuild

... Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. Weight of column = l / sum(l) (l = number of sequnces representing column) . ... 9 # Create alignment from sequences . ... 15 # For each sequence, print number of gaps and non-gaps in alignment . ... 19 for column in alignment . ... 26 # Print number of gaps in each column . ... 29 column_gaps = 0 . ... 31 if sequence not in column : . ...

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• allpy: b2ec17578145 lib/block.py
• allpy: fb3164f03984 lib/block.py
• allpy: ab9e2260a60a lib/block.py

Электронная библиотека Попечительского совета . ... Narkiewicz W. - Uniform Distribution Of Sequences Of Integers In Residue Classes . ... Название: Uniform Distribution Of Sequences Of Integers In Residue Classes . Автор: Narkiewicz W. Язык: . ... Sequence uniformly distributed mod N 1 . Sequence weakly uniformly distributed mod N 8 . ... Uniform distribution mod N 1 . Uniform distribution mod N, criterion 1 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Drmota M., Tichy R.F. - Sequences, Discrepancies and Applications ::
• Smith R.C., Demetriou M.A. - Research Directions in Distributed Parameter
• Rachkovskii D.A., Slipchenko S.V. - A binding Procedure for Distributed Binary

... Interface description . ... 6 Distributed array creating and deleting . ... 13.4 Access to elements of local part of distributed array . 13.4.1 Requesting if array element is allocated in local part of distributed array . ... 13.4.5 Coping element of local part of distributed array to element of local part of other distributed array . 13.4.6 Requesting address of element of local part of distributed array . ... 14.5 Access to distributed array elements, allocated in remote element buffer . ...

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• Lib-DVM. Interface description. Part 2 (6-7)
• Fortran DVM language description. Part 1 (1-4)
• C-DVM language description. Part 1 (1 - 4)

IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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• http://kodomo.cmm.msu.ru/~vasilisa/fdnaml_help.txt
• http://kodomo.cmm.msu.ru/~mikhail88/term4/evolution.files/distmat.txt
• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/blastclust.html

Declination distribution of Supernovae. This graph shows the distribution of SNe according to the declination of their parent galaxies. ... This graph is kept up to date till SN 2000ek . Along X-axis there are all declination bands so that you have to read in this way: for example, the band on the graph marked as 50 takes in all parent galaxies' declinations between +40° and +50°, or if one prefers ...until +50°, and so on.. ...

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• Building and Installing the Distribution
• Distribution of Supernovae according to their parent galaxies' recession
• Supernovae distribution according to their magnitudes.

Next: State of development Up: Guided tour through MICO Previous: Guided tour through MICO . Modern programming languages employ the object paradigm to structure computation within a single operating system process. The next logical step is to distribute a computation over multiple processes on one single or even on different machines. ... The Common Object Request Broker Architecture (CORBA) is a specification of such a middleware platform by the Object Management Group (OMG) (see [ 5 ]). ...

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• Apache module mod_setenvif

... We obtained 20 complete cytochrome b sequences (1140 bp) of Meles leucurus from the Korean Peninsula (mainland Korea and Jeju Island), Russian Far East, and Mongolia, and these sequences were compared to complete and partial (629 bp) sequences of M. leucurus , obtained from GenBank, in order to reexamine genetic differentiation among M. leucurus from Korea, Siberian and Far-eastern Russia, Mongolia, and China. ...

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• Geographic variation of skull traits in the Libyan jird, Meriones libycus
• The distributions of telomeric and ribosomal DNA on the chromosomes of two

... Distributed Array Datatype Constructor . ... The distributed array type constructor supports HPF-like [ 12 ] data distributions. ... MPI_TYPE_CREATE_DARRAY(size, rank, ndims, array_of_gsizes, array_of_distribs, array_of_dargs, array_of_psizes, order, oldtype, newtype) . ... IN array_of_gsizes] number of elements of type oldtype in each dimension of global array (array of positive integers) . ... IN oldtype] old datatype (handle) . ... See Example Distributed Array Datatype Constructor .) ... Центры ...

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by Margarita Dzhalalova It is known that the pressure difference values for a round parachute are constant over total canopy, then for a square parachute the values of pressure difference are non-uniform along radial ribbons differing even from each other and depending mainly on certain sets of line lengths, and therefore square parachutes attain different shapes from each other ( Fig.1 - photo of var.1 and var.2). ... Distribution of pressure coefficient along radial ribbons of square parachute. ...

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• Air-Permeability Influence on Pressure Distribution Character
• On Square Parachute Differential Equations

... Submitted Sequences: . ... Results 1.REFINED ALIGNMENT Power 4.27 Homology percent 5.3 Symbols used in the alighnment charts: ' ' - average weight of column pair exchanges is less than weight matrix mean value '.' - is less than mean value plus one SD '+' - is less than mean value plus two SD '*' - is greater than mean value plus two SD .. ... SQ1 ( 48) yhtcggillnSHWVLTAAHCFKNKkkvt SQ2 ( 46) srqtfsirsiSQNGYDPRQNLNDVL--- SQ3 ( 1) ----------SRRTYTLTDYLKSTFr-- 5TH LOCAL SUPERMOTIF, power 2.51 + *.. ...

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• DIMACS Series in Discrete Mathematics
• GeneBee BLAST 2.2.8 Services Help
• GeneBee BLAST 2.2.22+ Services Help

... X-COM: Distributed Computing Software . ... The idea of distributed computing, or metacomputing, is to combine available computational resources for different applications processing. ... For these applications we simultaneously used high-performance computational resources of Moscow State University and Russian Academy of Sciences, computing centers of Saint Petersburg, Novosibirsk, Chelyabinsk, Ufa, Tomsk, etc. ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• Distributed Modular Monitoring System: a New Approach to Supercomputer

There is a special set of phase space functions which may be used to construct cuts and distributions in the framework of CompHEP. ... Key Character)(momentum set) . A set of momenta is represented as a set of digits. ... For example, C13 means a cosine of the angle between momenta and . The momenta are assigned to particles according to their sequence in the process name. ... energy of the particle set. ... mass of the particle set. ... transverse momentum of the particle set. ...

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• тЬО calg:dubna07:abstracts [THEP]
• calg:dubna07:abstracts [THEP]

... Results . ... The main results of 2004 were the comparative analysis of genetic diversity of populations of saiga (Saiga tatarica). ... Molecular-genetic diversity and phylogeographic structure of moose population (Alces alces) in the different regions of European part of Russia and Ural were also studied. ... This testifies enough lengthy migrations of moose within the studied region and genetic unity of moose of Europe and Ural. ... Low genetic diversity of this species was determined. ...

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• Povolzhskiy Journal of Ecology: Povolzhskiy Journal of Ecology: 2007, Issue 4
• Laboratories: Laboratory for Comparative Ethology and Biocommunication: Results
• Russian Journal of Biological Invasions: 2011, issue ? 2